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Searched refs:markx (Results 1 – 25 of 34) sorted by relevance

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/dports/biology/fasta3/fasta-36.3.8/src/
H A Ddoinit.c307 m_msp->markx = 0; in initenv()
472 m_msp->markx = set_markx(m_msp->markx, 0, '\0'); in initenv()
661 markx |= MX_HTML; in set_markx()
672 markx |= MX_AMAP; in set_markx()
675 markx |= (MX_HTML) ; in set_markx()
692 markx |= MX_M9SUMM; in set_markx()
698 markx |= MX_M11OUT; in set_markx()
701 return markx; in set_markx()
856 this->markx = set_markx(this->markx,itmp,ctmp); in parse_markx()
873 m_msp->markx = this->markx; in markx_to_m_msp()
[all …]
H A Dmshowalign2.c212 if (m_msp->markx & MX_HTML) { in showalign()
227 if (m_msp->markx & MX_MBLAST) { in showalign()
409 if (m_msp->markx & MX_HTML ) { in showalign()
544 if ((m_msp->markx & MX_ATYPE)!=7 && !(m_msp->markx & MX_M10FORM)) { in showalign()
650 else if ((m_msp->markx & MX_ATYPE)!=7 && !(m_msp->markx & MX_M10FORM)) { in showalign()
652 if (m_msp->markx & MX_HTML) { in showalign()
743 (m_msp->markx & MX_M9SUMM) && in showalign()
770 if (m_msp->markx & MX_HTML) { in showalign()
799 if (m_msp->markx & MX_AMAP && (m_msp->markx & MX_ATYPE)==7) in do_show()
834 if (m_msp->markx & MX_HTML) { in do_show()
[all …]
H A Dmshowbest.c152 if (m_msp->markx & MX_M11OUT) return; in showbest()
183 if (m_msp->markx & MX_HTML) { in showbest()
216 if (m_msp->markx & MX_M8OUT) { in showbest()
243 if (m_msp->markx & MX_M8COMMENT) { in showbest()
256 if (m_msp->markx & MX_MBLAST2) { in showbest()
277 if (m_msp->markx & MX_M9SUMM) { in showbest()
301 if (m_msp->markx & MX_M9SUMM) { in showbest()
440 if (m_msp->markx & MX_M8OUT) { in showbest()
527 if (m_msp->markx & MX_M9SUMM || m_msp->markx & MX_M8OUT) { in showbest()
561 if (!(m_msp->markx & MX_M8OUT)) { in showbest()
[all …]
H A Dc_dispn.c123 if (m_msp->markx& MX_AMAP && (m_msp->markx & MX_ATYPE)==7) return; in discons()
132 if (m_msp->markx & MX_ASEP) { in discons()
150 if (m_msp->markx & MX_M10FORM) { in discons()
246 if (!(m_msp->markx & MX_MBLAST)) { in discons()
369 if (m_msp->markx & MX_MBLAST) { in discons()
393 if (m_msp->markx&MX_ANNOT_MID) { in discons()
397 if (m_msp->markx&MX_ANNOT_COORD) { in discons()
410 if (!(m_msp->markx & MX_MBLAST)) { in discons()
443 int mlen, int markx) in disgraph() argument
465 if ((markx&MX_ATYPE) == 7 ) in disgraph()
[all …]
H A Dstructs.h59 int markx; member
128 int markx; /* alignment display type */ member
H A Dcompacc2.c452 if (m_msp->markx & MX_M11OUT) { in print_header1()
456 if (m_msp->markx & MX_HTML) { in print_header1()
473 if (m_msp->markx & MX_MBLAST2) { in print_header1()
556 if (m_msp->markx & MX_MBLAST2) { in print_header3()
578 if (m_msp->markx & MX_M10FORM) { in print_header4()
602 if (m_msp->markx & MX_MBLAST2) { in print_header5()
610 if (m_msp->markx & MX_M8COMMENT) { in print_header5()
614 if ( !((m_msp->markx & MX_M8OUT) || (m_msp->markx & MX_HTML)) in print_header5()
627 if (m_msp->markx & MX_MBLAST2) { in print_header5()
877 if (m_msp->markx & MX_M10FORM) { in prhist()
[all …]
H A Dcompacc2e.c453 if (m_msp->markx & MX_M11OUT) { in print_header1()
457 if (m_msp->markx & MX_HTML) { in print_header1()
474 if (m_msp->markx & MX_MBLAST2) { in print_header1()
557 if (m_msp->markx & MX_MBLAST2) { in print_header3()
579 if (m_msp->markx & MX_M10FORM) { in print_header4()
603 if (m_msp->markx & MX_MBLAST2) { in print_header5()
611 if (m_msp->markx & MX_M8COMMENT) { in print_header5()
615 if ( !((m_msp->markx & MX_M8OUT) || (m_msp->markx & MX_HTML)) in print_header5()
628 if (m_msp->markx & MX_MBLAST2) { in print_header5()
878 if (m_msp->markx & MX_M10FORM) { in prhist()
[all …]
H A Dcomp_lib9.c310 void markx_to_m_msp(struct mngmsg *m_msp, struct markx_str *markx);
311 void m_msp_to_markx(struct markx_str *markx, struct mngmsg *m_msp);
942 if (!(m_msg.markx & MX_M9SUMM) && leng > m_msg.aln.llen) leng -= 10; in main()
945 if (!(m_msg.markx & MX_MBLAST2)) { in main()
1235 if (!(m_msg.markx & (MX_MBLAST2+MX_M8OUT)) && in main()
1301 if (!(m_msg.markx & (MX_MBLAST2+MX_M8OUT)) && in main()
1553 if (!(m_msg.markx & (MX_MBLAST2+MX_M8OUT)) && in main()
1574 if (!(m_msg.markx & (MX_MBLAST2+MX_M8OUT)) && in main()
1635 if (m_msg.nshow==0 && m_msg.markx & MX_M8COMMENT) { in main()
1644 if (m_msg.nshow==0 && cur_markx->markx & MX_M8COMMENT) { in main()
H A Dres_stats.c130 m_msg.markx = 0;
473 if (m_msg.markx & MX_M10FORM) { in prhist()
/dports/biology/fasta/fasta/
H A Dndispn.c24 extern int llen, markx, showall;
59 if (markx==4) return; in discons()
61 if (markx==3) { in discons()
81 if (markx==10) { in discons()
184 switch (markx) { in discons()
198 line[1][i]= (markx==1) ? 'x':'.'; in discons()
202 line[1][i]= (markx==1) ? 'X':' '; in discons()
207 if (markx==0) { in discons()
280 if (markx == 4) in disgraph()
297 if (markx==4) in disgraph()
[all …]
H A Dzzlgmata.c47 extern int markx;
166 if (markx == 4 || markx == 5 || markx == 6)
168 else if (markx < 10) {
173 else if (markx == 10) {
187 if (markx==10) {
342 if (markx == 4)
344 else if (markx < 4 || markx==5) {
348 if (markx==5) {
354 else if (markx==10) {
H A Dalign.c77 int showall,markx, llen; variable
223 markx=0; in initenv()
224 if ((cptr=getenv("MARKX"))==NULL) markx=0; in initenv()
225 else sscanf(cptr,"%d",&markx); in initenv()
231 case 'm': sscanf(optarg,"%d",&markx); break; in initenv()
H A Dssearch.c536 if (markx==10) {
606 markx=0;
608 else sscanf(cptr,"%d",&markx);
639 case 'm': sscanf(optarg,"%d",&markx);
640 if (markx == 4) llen = 50;
641 if (markx > 5 && markx != 10 ) markx = 0;
1026 if (markx<10) fprintf(outfd,"\n");
1109 if (markx != 4 && markx<10) {
1137 if (markx<=4) name1[6]='\0';
1139 if (markx==10) {
[all …]
H A Dlalign2.c92 int showall,markx, llen; variable
277 if (markx < 10) { in main()
292 else if (markx==10) { in main()
368 markx=0; in initenv()
369 if ((cptr=getenv("MARKX"))==NULL) markx=0; in initenv()
370 else sscanf(cptr,"%d",&markx); in initenv()
390 case 'm': sscanf(optarg,"%d",&markx); break; in initenv()
H A Dzxlgmata.c51 extern int markx;
115 if (markx == 4)
118 if (markx==5) {
194 if (markx == 4)
H A Dscore_al.c72 int showall,markx, llen; variable
266 markx=0;
267 if ((cptr=getenv("MARKX"))==NULL) markx=0;
268 else sscanf(cptr,"%d",&markx);
274 case 'm': sscanf(optarg,"%d",&markx); break;
H A Dfffasta.c980 if (markx==10) {
1010 if (markx==10) {
1033 if (markx<10) {
1096 markx=0;
1098 else sscanf(cptr,"%d",&markx);
1154 if (markx == 4) llen=50;
1155 if (markx > 5 && markx != 10 ) markx = 0;
2379 if (markx != 4 && markx<10) {
2424 if (markx<=4) name1[6]='\0';
2426 if (markx==10) {
[all …]
H A Dlsim2.c18 extern int markx;
281 if (markx < 10) { in SIM()
289 else if (markx==10) { in SIM()
299 if (markx == 5 || markx == 6) { in SIM()
319 if (markx < 10) printf("\n----------\n"); in SIM()
H A Dlsim3.c21 extern int markx;
298 if (markx < 10) { in SIM()
306 else if (markx==10) { in SIM()
317 if (markx == 5 || markx == 6) { in SIM()
336 if (markx < 10) printf("\n----------\n"); in SIM()
H A Drandlib.c392 int markx; variable
H A Dcrandseq.c385 int markx; variable
/dports/biology/fasta3/fasta-36.3.8/doc/
H A Dfasta.options10 case 'm': m_msg->markx
/dports/biology/emboss/EMBOSS-6.6.0/ajax/core/
H A Dajalign.c955 static void alignWriteMark(AjPAlign thys, ajint iali, ajint markx) in alignWriteMark() argument
1004 ajDebug("alignWriteMark iali:%d markx:%d\n", iali, markx); in alignWriteMark()
1036 if(markx == 1) in alignWriteMark()
1038 else if(markx == 2) in alignWriteMark()
1043 markx, seq, cons, ajSeqGetSeqS(data->Seq[1])); in alignWriteMark()
1046 markx, seq, cons, ajSeqGetSeqS(data->Seq[1])); in alignWriteMark()
1074 if(markx==10) in alignWriteMark()
1099 if(markx <= 2) in alignWriteMark()
1170 if(markx==2 && nseq==2 && iseq==1) in alignWriteMark()
1274 if(markx==3) in alignWriteMark()
[all …]
/dports/x11-toolkits/p5-Tk/Tk-804.035/pTk/mTk/generic/
H A DtkPanedWindow.c74 int markx, marky; /* Coordinates of the last mark set member
1088 pwPtr->slaves[sash]->markx = x;
1091 coords[0] = Tcl_NewIntObj(pwPtr->slaves[sash]->markx);
1129 diff = x - pwPtr->slaves[sash]->markx;
/dports/biology/seqio/seqio-1.2.2/
H A Dseqio.c6854 markx = isfp->fout_markx; in fastaout_read()
6857 if (markx == NONPARSABLE || markx == MARKX0 || in fastaout_read()
6858 markx == MARKX2 || markx == MARKX3) { in fastaout_read()
7002 else if (markx == MARKX10) { in fastaout_read()
7117 markx = isfp->fout_markx; in fastaout_getseq()
7118 if (markx == MARKX0 || markx == MARKX2) { in fastaout_getseq()
7254 if (markx == MARKX0) { in fastaout_getseq()
7260 if (markx == MARKX0) { in fastaout_getseq()
7273 else if (markx == MARKX3 || markx == MARKX10) { in fastaout_getseq()
7278 if (markx == MARKX3) in fastaout_getseq()
[all …]

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