/dports/biology/fasta3/fasta-36.3.8/src/ |
H A D | doinit.c | 307 m_msp->markx = 0; in initenv() 472 m_msp->markx = set_markx(m_msp->markx, 0, '\0'); in initenv() 661 markx |= MX_HTML; in set_markx() 672 markx |= MX_AMAP; in set_markx() 675 markx |= (MX_HTML) ; in set_markx() 692 markx |= MX_M9SUMM; in set_markx() 698 markx |= MX_M11OUT; in set_markx() 701 return markx; in set_markx() 856 this->markx = set_markx(this->markx,itmp,ctmp); in parse_markx() 873 m_msp->markx = this->markx; in markx_to_m_msp() [all …]
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H A D | mshowalign2.c | 212 if (m_msp->markx & MX_HTML) { in showalign() 227 if (m_msp->markx & MX_MBLAST) { in showalign() 409 if (m_msp->markx & MX_HTML ) { in showalign() 544 if ((m_msp->markx & MX_ATYPE)!=7 && !(m_msp->markx & MX_M10FORM)) { in showalign() 650 else if ((m_msp->markx & MX_ATYPE)!=7 && !(m_msp->markx & MX_M10FORM)) { in showalign() 652 if (m_msp->markx & MX_HTML) { in showalign() 743 (m_msp->markx & MX_M9SUMM) && in showalign() 770 if (m_msp->markx & MX_HTML) { in showalign() 799 if (m_msp->markx & MX_AMAP && (m_msp->markx & MX_ATYPE)==7) in do_show() 834 if (m_msp->markx & MX_HTML) { in do_show() [all …]
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H A D | mshowbest.c | 152 if (m_msp->markx & MX_M11OUT) return; in showbest() 183 if (m_msp->markx & MX_HTML) { in showbest() 216 if (m_msp->markx & MX_M8OUT) { in showbest() 243 if (m_msp->markx & MX_M8COMMENT) { in showbest() 256 if (m_msp->markx & MX_MBLAST2) { in showbest() 277 if (m_msp->markx & MX_M9SUMM) { in showbest() 301 if (m_msp->markx & MX_M9SUMM) { in showbest() 440 if (m_msp->markx & MX_M8OUT) { in showbest() 527 if (m_msp->markx & MX_M9SUMM || m_msp->markx & MX_M8OUT) { in showbest() 561 if (!(m_msp->markx & MX_M8OUT)) { in showbest() [all …]
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H A D | c_dispn.c | 123 if (m_msp->markx& MX_AMAP && (m_msp->markx & MX_ATYPE)==7) return; in discons() 132 if (m_msp->markx & MX_ASEP) { in discons() 150 if (m_msp->markx & MX_M10FORM) { in discons() 246 if (!(m_msp->markx & MX_MBLAST)) { in discons() 369 if (m_msp->markx & MX_MBLAST) { in discons() 393 if (m_msp->markx&MX_ANNOT_MID) { in discons() 397 if (m_msp->markx&MX_ANNOT_COORD) { in discons() 410 if (!(m_msp->markx & MX_MBLAST)) { in discons() 443 int mlen, int markx) in disgraph() argument 465 if ((markx&MX_ATYPE) == 7 ) in disgraph() [all …]
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H A D | structs.h | 59 int markx; member 128 int markx; /* alignment display type */ member
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H A D | compacc2.c | 452 if (m_msp->markx & MX_M11OUT) { in print_header1() 456 if (m_msp->markx & MX_HTML) { in print_header1() 473 if (m_msp->markx & MX_MBLAST2) { in print_header1() 556 if (m_msp->markx & MX_MBLAST2) { in print_header3() 578 if (m_msp->markx & MX_M10FORM) { in print_header4() 602 if (m_msp->markx & MX_MBLAST2) { in print_header5() 610 if (m_msp->markx & MX_M8COMMENT) { in print_header5() 614 if ( !((m_msp->markx & MX_M8OUT) || (m_msp->markx & MX_HTML)) in print_header5() 627 if (m_msp->markx & MX_MBLAST2) { in print_header5() 877 if (m_msp->markx & MX_M10FORM) { in prhist() [all …]
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H A D | compacc2e.c | 453 if (m_msp->markx & MX_M11OUT) { in print_header1() 457 if (m_msp->markx & MX_HTML) { in print_header1() 474 if (m_msp->markx & MX_MBLAST2) { in print_header1() 557 if (m_msp->markx & MX_MBLAST2) { in print_header3() 579 if (m_msp->markx & MX_M10FORM) { in print_header4() 603 if (m_msp->markx & MX_MBLAST2) { in print_header5() 611 if (m_msp->markx & MX_M8COMMENT) { in print_header5() 615 if ( !((m_msp->markx & MX_M8OUT) || (m_msp->markx & MX_HTML)) in print_header5() 628 if (m_msp->markx & MX_MBLAST2) { in print_header5() 878 if (m_msp->markx & MX_M10FORM) { in prhist() [all …]
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H A D | comp_lib9.c | 310 void markx_to_m_msp(struct mngmsg *m_msp, struct markx_str *markx); 311 void m_msp_to_markx(struct markx_str *markx, struct mngmsg *m_msp); 942 if (!(m_msg.markx & MX_M9SUMM) && leng > m_msg.aln.llen) leng -= 10; in main() 945 if (!(m_msg.markx & MX_MBLAST2)) { in main() 1235 if (!(m_msg.markx & (MX_MBLAST2+MX_M8OUT)) && in main() 1301 if (!(m_msg.markx & (MX_MBLAST2+MX_M8OUT)) && in main() 1553 if (!(m_msg.markx & (MX_MBLAST2+MX_M8OUT)) && in main() 1574 if (!(m_msg.markx & (MX_MBLAST2+MX_M8OUT)) && in main() 1635 if (m_msg.nshow==0 && m_msg.markx & MX_M8COMMENT) { in main() 1644 if (m_msg.nshow==0 && cur_markx->markx & MX_M8COMMENT) { in main()
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H A D | res_stats.c | 130 m_msg.markx = 0; 473 if (m_msg.markx & MX_M10FORM) { in prhist()
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/dports/biology/fasta/fasta/ |
H A D | ndispn.c | 24 extern int llen, markx, showall; 59 if (markx==4) return; in discons() 61 if (markx==3) { in discons() 81 if (markx==10) { in discons() 184 switch (markx) { in discons() 198 line[1][i]= (markx==1) ? 'x':'.'; in discons() 202 line[1][i]= (markx==1) ? 'X':' '; in discons() 207 if (markx==0) { in discons() 280 if (markx == 4) in disgraph() 297 if (markx==4) in disgraph() [all …]
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H A D | zzlgmata.c | 47 extern int markx; 166 if (markx == 4 || markx == 5 || markx == 6) 168 else if (markx < 10) { 173 else if (markx == 10) { 187 if (markx==10) { 342 if (markx == 4) 344 else if (markx < 4 || markx==5) { 348 if (markx==5) { 354 else if (markx==10) {
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H A D | align.c | 77 int showall,markx, llen; variable 223 markx=0; in initenv() 224 if ((cptr=getenv("MARKX"))==NULL) markx=0; in initenv() 225 else sscanf(cptr,"%d",&markx); in initenv() 231 case 'm': sscanf(optarg,"%d",&markx); break; in initenv()
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H A D | ssearch.c | 536 if (markx==10) { 606 markx=0; 608 else sscanf(cptr,"%d",&markx); 639 case 'm': sscanf(optarg,"%d",&markx); 640 if (markx == 4) llen = 50; 641 if (markx > 5 && markx != 10 ) markx = 0; 1026 if (markx<10) fprintf(outfd,"\n"); 1109 if (markx != 4 && markx<10) { 1137 if (markx<=4) name1[6]='\0'; 1139 if (markx==10) { [all …]
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H A D | lalign2.c | 92 int showall,markx, llen; variable 277 if (markx < 10) { in main() 292 else if (markx==10) { in main() 368 markx=0; in initenv() 369 if ((cptr=getenv("MARKX"))==NULL) markx=0; in initenv() 370 else sscanf(cptr,"%d",&markx); in initenv() 390 case 'm': sscanf(optarg,"%d",&markx); break; in initenv()
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H A D | zxlgmata.c | 51 extern int markx; 115 if (markx == 4) 118 if (markx==5) { 194 if (markx == 4)
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H A D | score_al.c | 72 int showall,markx, llen; variable 266 markx=0; 267 if ((cptr=getenv("MARKX"))==NULL) markx=0; 268 else sscanf(cptr,"%d",&markx); 274 case 'm': sscanf(optarg,"%d",&markx); break;
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H A D | fffasta.c | 980 if (markx==10) { 1010 if (markx==10) { 1033 if (markx<10) { 1096 markx=0; 1098 else sscanf(cptr,"%d",&markx); 1154 if (markx == 4) llen=50; 1155 if (markx > 5 && markx != 10 ) markx = 0; 2379 if (markx != 4 && markx<10) { 2424 if (markx<=4) name1[6]='\0'; 2426 if (markx==10) { [all …]
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H A D | lsim2.c | 18 extern int markx; 281 if (markx < 10) { in SIM() 289 else if (markx==10) { in SIM() 299 if (markx == 5 || markx == 6) { in SIM() 319 if (markx < 10) printf("\n----------\n"); in SIM()
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H A D | lsim3.c | 21 extern int markx; 298 if (markx < 10) { in SIM() 306 else if (markx==10) { in SIM() 317 if (markx == 5 || markx == 6) { in SIM() 336 if (markx < 10) printf("\n----------\n"); in SIM()
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H A D | randlib.c | 392 int markx; variable
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H A D | crandseq.c | 385 int markx; variable
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/dports/biology/fasta3/fasta-36.3.8/doc/ |
H A D | fasta.options | 10 case 'm': m_msg->markx
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/dports/biology/emboss/EMBOSS-6.6.0/ajax/core/ |
H A D | ajalign.c | 955 static void alignWriteMark(AjPAlign thys, ajint iali, ajint markx) in alignWriteMark() argument 1004 ajDebug("alignWriteMark iali:%d markx:%d\n", iali, markx); in alignWriteMark() 1036 if(markx == 1) in alignWriteMark() 1038 else if(markx == 2) in alignWriteMark() 1043 markx, seq, cons, ajSeqGetSeqS(data->Seq[1])); in alignWriteMark() 1046 markx, seq, cons, ajSeqGetSeqS(data->Seq[1])); in alignWriteMark() 1074 if(markx==10) in alignWriteMark() 1099 if(markx <= 2) in alignWriteMark() 1170 if(markx==2 && nseq==2 && iseq==1) in alignWriteMark() 1274 if(markx==3) in alignWriteMark() [all …]
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/dports/x11-toolkits/p5-Tk/Tk-804.035/pTk/mTk/generic/ |
H A D | tkPanedWindow.c | 74 int markx, marky; /* Coordinates of the last mark set member 1088 pwPtr->slaves[sash]->markx = x; 1091 coords[0] = Tcl_NewIntObj(pwPtr->slaves[sash]->markx); 1129 diff = x - pwPtr->slaves[sash]->markx;
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/dports/biology/seqio/seqio-1.2.2/ |
H A D | seqio.c | 6854 markx = isfp->fout_markx; in fastaout_read() 6857 if (markx == NONPARSABLE || markx == MARKX0 || in fastaout_read() 6858 markx == MARKX2 || markx == MARKX3) { in fastaout_read() 7002 else if (markx == MARKX10) { in fastaout_read() 7117 markx = isfp->fout_markx; in fastaout_getseq() 7118 if (markx == MARKX0 || markx == MARKX2) { in fastaout_getseq() 7254 if (markx == MARKX0) { in fastaout_getseq() 7260 if (markx == MARKX0) { in fastaout_getseq() 7273 else if (markx == MARKX3 || markx == MARKX10) { in fastaout_getseq() 7278 if (markx == MARKX3) in fastaout_getseq() [all …]
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