/dports/biology/mmseqs2/MMseqs2-13-45111/lib/cacode/ |
H A D | lambda_calculator.cpp | 53 bool Check_range(const double **mat_b); 68 if (!Check_range(mat_b)) return -1.0; in calculate_lambda() 125 bool Check_range(const double **mat_b) { in Check_range() argument 142 if (mat_b[i][j] > 0) { in Check_range() 143 if (mat_b[i][j] > r_max) r_max = mat_b[i][j]; in Check_range() 146 if (mat_b[j][i] > 0) { in Check_range() 147 if (mat_b[j][i] > c_max) c_max = mat_b[j][i]; in Check_range() 186 makematrix(mat_b, a, lambda); in Check_det() 206 makematrix(mat_b, a, lambda); in Check_root() 351 makematrix(mat_b, a, lambda); in Find_JP() [all …]
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H A D | lambda_calculator.h | 7 double calculate_lambda( const double** mat_b, int alpha_size,
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/dports/devel/efl/efl-1.25.1/src/lib/eina/ |
H A D | eina_matrix.c | 1043 MATRIX_XZ(mat_a) * MATRIX_ZX(mat_b) + MATRIX_XW(mat_a) * MATRIX_WX(mat_b); in eina_matrix4_compose() 1045 MATRIX_XZ(mat_a) * MATRIX_ZY(mat_b) + MATRIX_XW(mat_a) * MATRIX_WY(mat_b); in eina_matrix4_compose() 1047 MATRIX_XZ(mat_a) * MATRIX_ZZ(mat_b) + MATRIX_XW(mat_a) * MATRIX_WZ(mat_b); in eina_matrix4_compose() 1049 MATRIX_XZ(mat_a) * MATRIX_ZW(mat_b) + MATRIX_XW(mat_a) * MATRIX_WW(mat_b); in eina_matrix4_compose() 1052 MATRIX_YZ(mat_a) * MATRIX_ZX(mat_b) + MATRIX_YW(mat_a) * MATRIX_WX(mat_b); in eina_matrix4_compose() 1054 MATRIX_YZ(mat_a) * MATRIX_ZY(mat_b) + MATRIX_YW(mat_a) * MATRIX_WY(mat_b); in eina_matrix4_compose() 1056 MATRIX_YZ(mat_a) * MATRIX_ZZ(mat_b) + MATRIX_YW(mat_a) * MATRIX_WZ(mat_b); in eina_matrix4_compose() 1058 MATRIX_YZ(mat_a) * MATRIX_ZW(mat_b) + MATRIX_YW(mat_a) * MATRIX_WW(mat_b); in eina_matrix4_compose() 1061 MATRIX_ZZ(mat_a) * MATRIX_ZX(mat_b) + MATRIX_ZW(mat_a) * MATRIX_WX(mat_b); in eina_matrix4_compose() 1063 MATRIX_ZZ(mat_a) * MATRIX_ZY(mat_b) + MATRIX_ZW(mat_a) * MATRIX_WY(mat_b); in eina_matrix4_compose() [all …]
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H A D | eina_matrix.h | 637 const Eina_Matrix3 *mat_b); 653 const Eina_Matrix3 *mat_b); 888 const Eina_Matrix4 *mat_a, const Eina_Matrix4 *mat_b); 924 const Eina_Matrix4 *mat_b); 959 const Eina_Matrix4 *mat_b, 1125 const Eina_Matrix2 *mat_b); 1137 const Eina_Matrix2 *mat_b);
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/dports/lang/halide/Halide-release_2019_08_27-2654-g664dc4993/apps/nn_ops/ |
H A D | MatrixMultiply.cpp | 40 Halide::Runtime::Buffer<uint8_t> mat_b(nullptr, K, N); in main() local 66 mat_b.device_malloc(halide_hexagon_device_interface()); in main() 71 mat_b.allocate(); in main() 79 mat_b.for_each_value([](uint8_t &x) { in main() 95 int result = MatrixMultiply(mat_a, mat_b, bias, mat_a_offset, mat_b_offset, in main() 121 int32_t b_xk = (int32_t)mat_b(x, k) + mat_b_offset; in main()
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/dports/math/R-cran-gmp/gmp/src/ |
H A D | matrix.cc | 262 mat_b = bigintegerR::create_bignum(b); in matrix_mul_z() local 265 sizemod_b = mat_b.modulus.size(); in matrix_mul_z() 269 b_nrow = mat_b.nrow, b_len = mat_b.size(), in matrix_mul_z() 375 if(mpz_cmp(common_modulus, mat_b.modulus[0].getValueTemp()) == 0 in matrix_mul_z() 383 } else if ((sizemod_b == 1) && !mat_b.modulus[0].isNA()) { in matrix_mul_z() 384 mpz_set(common_modulus, mat_b[0].getModulus().getValueTemp()); in matrix_mul_z() 417 #define B_K_J mat_b.value [ k + j *b_nrow] in matrix_mul_z() 425 #define B_K_J mat_b.value [ k + j *b_nrow] in matrix_mul_z() 433 #define B_K_J mat_b.value [ j + k *b_nrow] in matrix_mul_z()
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H A D | matrixq.cc | 229 mat_b = bigrationalR::create_bignum(b); in matrix_mul_q() local 233 b_nrow = mat_b.nrow, b_len = mat_b.size(), in matrix_mul_q() 354 #define B_K_J mat_b[ k + j *b_nrow] in matrix_mul_q() 362 #define B_K_J mat_b[ k + j *b_nrow] in matrix_mul_q() 370 #define B_K_J mat_b[ j + k *b_nrow] in matrix_mul_q()
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/dports/math/dbcsr/dbcsr-2.1.0/src/acc/libsmm_acc/ |
H A D | libsmm_acc_benchmark.h | 41 double *mat_a, *mat_b, *mat_c; member 54 int n_a, double * mat_a, int n_b, double* mat_b, 58 void stackCalc(int* stack, int n_stack, double* mat_c, double *mat_a, double* mat_b,
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H A D | libsmm_acc_benchmark.cpp | 54 h->mat_b = (double*) malloc(h->n_b * max_k * max_n * sizeof(double)); in libsmm_acc_benchmark_init() 90 free(handle->mat_b); in libsmm_acc_benchmark_finalize() 115 int n_a, double * mat_a, int n_b, double* mat_b, in stackInit() argument 163 void stackCalc(int* stack, int n_stack, double* mat_c, double *mat_a, double* mat_b, in stackCalc() argument 177 res += mat_a[a_base + a_ind] * mat_b[b_base + b_ind]; in stackCalc() 297 matInit(h->mat_b, h->n_b, mat_k, mat_n, 24); in libsmm_acc_benchmark() 301 …stackInit(h->stack, h->n_stack, h->n_c, h->mat_c, h->n_a, h->mat_a, h->n_b, h->mat_b, mat_m, mat_n… in libsmm_acc_benchmark() 305 stackCalc(h->stack, h->n_stack, h->mat_c, h->mat_a, h->mat_b, mat_m, mat_n, mat_k); in libsmm_acc_benchmark() 312 …ACC_API_CALL(Memcpy, (h->d_mat_b, h->mat_b, h->n_b * mat_k * mat_n * sizeof(double), ACC(MemcpyHos… in libsmm_acc_benchmark()
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H A D | libsmm_acc.cpp | 67 matInit(h->mat_b, h->n_b, k, n, 24); in validate_kernel() 68 stackInit(h->stack, h->n_stack, h->n_c, h->mat_c, h->n_a, h->mat_a, h->n_b, h->mat_b, m, n, k); in validate_kernel() 70 stackCalc(h->stack, h->n_stack, h->mat_c, h->mat_a, h->mat_b, m, n, k); in validate_kernel() 75 …ACC_API_CALL(Memcpy, (h->d_mat_b, h->mat_b, h->n_b * k * n * sizeof(double), ACC(MemcpyHostToDevic… in validate_kernel()
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/dports/science/cp2k/cp2k-2e995eec7fd208c8a72d9544807bd8b8ba8cd1cc/exts/dbcsr/src/acc/libsmm_acc/ |
H A D | libsmm_acc_benchmark.h | 39 double *mat_a, *mat_b, *mat_c; member 52 int n_a, double * mat_a, int n_b, double* mat_b, 56 void stackCalc(int* stack, int n_stack, double* mat_c, double *mat_a, double* mat_b,
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H A D | libsmm_acc_benchmark.cpp | 54 h->mat_b = (double*) malloc(h->n_b * max_k * max_n * sizeof(double)); in libsmm_acc_benchmark_init() 90 free(handle->mat_b); in libsmm_acc_benchmark_finalize() 115 int n_a, double * mat_a, int n_b, double* mat_b, in stackInit() argument 163 void stackCalc(int* stack, int n_stack, double* mat_c, double *mat_a, double* mat_b, in stackCalc() argument 177 res += mat_a[a_base + a_ind] * mat_b[b_base + b_ind]; in stackCalc() 292 matInit(h->mat_b, h->n_b, mat_k, mat_n, 24); in libsmm_acc_benchmark() 296 …stackInit(h->stack, h->n_stack, h->n_c, h->mat_c, h->n_a, h->mat_a, h->n_b, h->mat_b, mat_m, mat_n… in libsmm_acc_benchmark() 300 stackCalc(h->stack, h->n_stack, h->mat_c, h->mat_a, h->mat_b, mat_m, mat_n, mat_k); in libsmm_acc_benchmark() 307 …ACC_API_CALL(Memcpy, (h->d_mat_b, h->mat_b, h->n_b * mat_k * mat_n * sizeof(double), ACC(MemcpyHos… in libsmm_acc_benchmark()
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H A D | libsmm_acc.cpp | 72 matInit(h->mat_b, h->n_b, k, n, 24); in validate_kernel() 73 stackInit(h->stack, h->n_stack, h->n_c, h->mat_c, h->n_a, h->mat_a, h->n_b, h->mat_b, m, n, k); in validate_kernel() 75 stackCalc(h->stack, h->n_stack, h->mat_c, h->mat_a, h->mat_b, m, n, k); in validate_kernel() 80 …ACC_API_CALL(Memcpy, (h->d_mat_b, h->mat_b, h->n_b * k * n * sizeof(double), ACC(MemcpyHostToDevic… in validate_kernel()
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/dports/math/clblast/CLBlast-1.1.0/test/routines/level3/ |
H A D | xtrsm_data.hpp | 74 void GenerateProperTrsmMatrices(const Arguments<T> &args, const int seed, T *mat_a, T *mat_b) in GenerateProperTrsmMatrices() argument 136 SetElement<T>(args.layout, i, j, mat_b, args.b_ld, value); in GenerateProperTrsmMatrices() 154 SetElement<T>(args.layout, i, j, mat_b, args.b_ld, value); in GenerateProperTrsmMatrices() 176 auto value = GetElement<T>(args.layout, i, j, mat_b, args.b_ld); in GenerateProperTrsmMatrices() 178 SetElement<T>(args.layout, i, j, mat_b, args.b_ld, value); in GenerateProperTrsmMatrices()
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/dports/devel/hyperscan/boost_1_75_0/libs/qvm/test/ |
H A D | cmp_mm_test.cpp | 63 typedef boost::qvm::mat<scalar_b, 3, 3> mat_b; in test2() typedef 65 mat_b const b = { { {42, 94, 96}, {72, 95, 81}, {12, 84, 33} } }; in test2() 67 mat_b const d = { { {21, 47, 48}, {36, 47, 65}, {79, 27, 41} } }; in test2()
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/dports/science/chrono/chrono-7.0.1/src/demos/multicore/ |
H A D | demo_MCORE_cratering.cpp | 300 auto mat_b = chrono_types::make_shared<ChMaterialSurfaceSMC>(); in CreateFallingBall() local 301 mat_b->SetYoungModulus(1e8f); in CreateFallingBall() 302 mat_b->SetFriction(0.4f); in CreateFallingBall() 303 mat_b->SetRestitution(0.1f); in CreateFallingBall() 305 auto mat_b = chrono_types::make_shared<ChMaterialSurfaceNSC>(); in CreateFallingBall() 306 mat_b->SetFriction(mu_c); in CreateFallingBall() 322 utils::AddSphereGeometry(ball.get(), mat_b, R_b); in CreateFallingBall()
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/dports/devel/cltune/CLTune-2.7.0/samples/conv_simple/ |
H A D | conv_simple.cc | 45 std::vector<float> mat_b(kSizeX*kSizeY, 0.0f); in main() local 80 tuner.AddArgumentOutput(mat_b); in main()
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/dports/devel/cltune/CLTune-2.7.0/samples/gemm/ |
H A D | gemm.cc | 93 auto mat_b = std::vector<float>(kSizeN*kSizeK); in main() local 103 for (auto &item: mat_b) { item = distribution(generator); } in main() 194 tuner.AddArgumentInput(mat_b); in main()
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H A D | gemm_reference.opencl | 32 const __global float* mat_b, 43 float mat_b_val = mat_b[k*kSizeN + col];
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/dports/devel/cltune/CLTune-2.7.0/samples/conv/ |
H A D | conv.cc | 96 auto mat_b = std::vector<float>(kSizeX*kSizeY); in main() local 106 for (auto &item: mat_b) { item = 0.0f; } in main() 213 tuner.AddArgumentOutput(mat_b); in main()
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/dports/biology/ncbi-toolkit/ncbi/algo/blast/composition_adjustment/ |
H A D | composition_adjustment.c | 1262 Nlm_DenseMatrixFree(&NRrecord->mat_b); in Blast_CompositionWorkspaceFree() 1284 NRrecord->mat_b = NULL; in Blast_CompositionWorkspaceNew() 1298 NRrecord->mat_b = Nlm_DenseMatrixNew(COMPO_NUM_TRUE_AA, in Blast_CompositionWorkspaceNew() 1300 if (NRrecord->mat_b == NULL) goto error_return; in Blast_CompositionWorkspaceNew() 1320 if (0 == Blast_GetJointProbsForMatrix(NRrecord->mat_b, in Blast_CompositionWorkspaceInit() 1366 NRrecord->mat_b, in Blast_CompositionMatrixAdj() 1375 desired_re = Blast_TargetFreqEntropy(NRrecord->mat_b); in Blast_CompositionMatrixAdj() 1394 &NRrecord->mat_b[0][0], in Blast_CompositionMatrixAdj()
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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/composition_adjustment/ |
H A D | composition_adjustment.c | 1262 Nlm_DenseMatrixFree(&NRrecord->mat_b); in Blast_CompositionWorkspaceFree() 1284 NRrecord->mat_b = NULL; in Blast_CompositionWorkspaceNew() 1298 NRrecord->mat_b = Nlm_DenseMatrixNew(COMPO_NUM_TRUE_AA, in Blast_CompositionWorkspaceNew() 1300 if (NRrecord->mat_b == NULL) goto error_return; in Blast_CompositionWorkspaceNew() 1320 if (0 == Blast_GetJointProbsForMatrix(NRrecord->mat_b, in Blast_CompositionWorkspaceInit() 1366 NRrecord->mat_b, in Blast_CompositionMatrixAdj() 1375 desired_re = Blast_TargetFreqEntropy(NRrecord->mat_b); in Blast_CompositionMatrixAdj() 1394 &NRrecord->mat_b[0][0], in Blast_CompositionMatrixAdj()
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/composition_adjustment/ |
H A D | composition_adjustment.c | 1262 Nlm_DenseMatrixFree(&NRrecord->mat_b); in Blast_CompositionWorkspaceFree() 1284 NRrecord->mat_b = NULL; in Blast_CompositionWorkspaceNew() 1298 NRrecord->mat_b = Nlm_DenseMatrixNew(COMPO_NUM_TRUE_AA, in Blast_CompositionWorkspaceNew() 1300 if (NRrecord->mat_b == NULL) goto error_return; in Blast_CompositionWorkspaceNew() 1320 if (0 == Blast_GetJointProbsForMatrix(NRrecord->mat_b, in Blast_CompositionWorkspaceInit() 1366 NRrecord->mat_b, in Blast_CompositionMatrixAdj() 1375 desired_re = Blast_TargetFreqEntropy(NRrecord->mat_b); in Blast_CompositionMatrixAdj() 1394 &NRrecord->mat_b[0][0], in Blast_CompositionMatrixAdj()
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/dports/graphics/inkscape/inkscape-1.1_2021-05-24_c4e8f9ed74/src/live_effects/ |
H A D | lpe-ellipse_5pts.cpp | 104 double mat_b[5][5] = in doEffect_path() local 146 double b1 = -_det5(mat_b); in doEffect_path()
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/dports/graphics/fyre/fyre-1.0.1/src/ |
H A D | de-jong.c | 646 double sine_rotation, cosine_rotation, mat_a = 0, mat_b = 0, mat_c = 0, mat_d = 0; in de_jong_calculate() local 674 mat_b = sine_rotation / self->aspect; in de_jong_calculate() 680 mat_b = 0; in de_jong_calculate() 769 x = point_x * mat_a + point_y * mat_b; in de_jong_calculate()
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