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Searched refs:match_sc (Results 1 – 4 of 4) sorted by relevance

/dports/biology/minimap2/minimap2-2.24/
H A Dmmpriv.h100 void mm_set_mapq(void *km, int n_regs, mm_reg1_t *regs, int min_chain_sc, int match_sc, int rep_len…
107 void mm_pair(void *km, int max_gap_ref, int dp_bonus, int sub_diff, int match_sc, const int *qlens,…
H A Dpe.c76 void mm_pair(void *km, int max_gap_ref, int pe_bonus, int sub_diff, int match_sc, const int *qlens,… in mm_pair() argument
159 …mapq_pe_alt = (int)(6.02f * ((max>>32) - (sc.a[sc.n - 2]>>32)) / match_sc - 4.343f * logf(n_sub));… in mm_pair()
H A Dhit.c421 void mm_set_mapq(void *km, int n_regs, mm_reg1_t *regs, int min_chain_sc, int match_sc, int rep_len… in mm_set_mapq() argument
445 … mapq = (int)(identity * pen_cm * q_coef * (1.0f - x * x) * logf((float)r->p->dp_max / match_sc)); in mm_set_mapq()
447 …int mapq_alt = (int)(6.02f * identity * identity * (r->p->dp_max - r->p->dp_max2) / match_sc + .49… in mm_set_mapq()
454 mapq = (int)(identity * pen_cm * q_coef * (1.0f - x) * logf((float)r->p->dp_max / match_sc)); in mm_set_mapq()
H A Dalign.c917 static int32_t mm_recal_max_dp(const mm_reg1_t *r, double b2, int32_t match_sc) in mm_recal_max_dp() argument
931 return (int32_t)(match_sc * (r->mlen - b2 * n_mis - gap_cost) + .499); in mm_recal_max_dp()