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Searched refs:matched_bases_after_indel (Results 1 – 2 of 2) sorted by relevance

/dports/biology/subread/subread-2.0.2-source/src/
H A Dgene-algorithms.c2055 …int matched_bases_after_indel = match_chro_support(read +test_start, array_index, read_start_pos +… in extend_covered_region() local
2060 …if(best_matched_bases_after_indel <matched_bases_after_indel && matched_bases_after_indel >= (int… in extend_covered_region()
2064 best_matched_bases_after_indel = matched_bases_after_indel; in extend_covered_region()
2135 …int matched_bases_after_indel = match_chro_support(read + window_start_pos - min(0, indel_adjustme… in extend_covered_region() local
2141 …if(best_matched_bases_after_indel <matched_bases_after_indel && matched_bases_after_indel >= (int… in extend_covered_region()
2144 best_matched_bases_after_indel = matched_bases_after_indel; in extend_covered_region()
H A Dcore-indel.c1705 …float matched_bases_after_indel = match_chro_support(read +test_start, array_index, read_start_pos… in core_extend_covered_region_13() local
1706 …("HEAD : MATCHED_AFTER_INDEL = %f ; MVMT=%d ; WINDOW_END=%d\n", matched_bases_after_indel, indel_m… in core_extend_covered_region_13()
1712 …if(best_matched_bases_after_indel <matched_bases_after_indel && matched_bases_after_indel >= (int… in core_extend_covered_region_13()
1716 best_matched_bases_after_indel = matched_bases_after_indel; in core_extend_covered_region_13()
1793 …float matched_bases_after_indel = match_chro_support(read + window_start_pos - min(0, indel_moveme… in core_extend_covered_region_13() local
1794 …("TAIL : MATCHED_AFTER_INDEL = %f ; MVMT=%d ; WINDOW_END=%d\n", matched_bases_after_indel, indel_m… in core_extend_covered_region_13()
1801 …if(best_matched_bases_after_indel <matched_bases_after_indel && matched_bases_after_indel >= (int… in core_extend_covered_region_13()
1804 best_matched_bases_after_indel = matched_bases_after_indel; in core_extend_covered_region_13()