| /dports/math/suitesparse-csparse/SuiteSparse-5.10.1/GraphBLAS/CUDA/ |
| H A D | GB_stringify_sparsity.c | 22 char *matrix_name, // "C", "M", "A", or "B" in GB_stringify_sparsity() argument
29 GB_macrofy_sparsity (sparsity_macros, matrix_name, ecode) ; in GB_stringify_sparsity()
77 char *matrix_name, // "C", "M", "A", or "B" in GB_macrofy_sparsity() argument
91 matrix_name, matrix_name, matrix_name, matrix_name) ; in GB_macrofy_sparsity()
100 matrix_name, matrix_name, matrix_name, matrix_name) ; in GB_macrofy_sparsity()
109 matrix_name, matrix_name, matrix_name, matrix_name) ; in GB_macrofy_sparsity()
118 matrix_name, matrix_name, matrix_name, matrix_name) ; in GB_macrofy_sparsity()
|
| /dports/math/suitesparse-klu/SuiteSparse-5.10.1/GraphBLAS/CUDA/ |
| H A D | GB_stringify_sparsity.c | 22 char *matrix_name, // "C", "M", "A", or "B" in GB_stringify_sparsity() argument
29 GB_macrofy_sparsity (sparsity_macros, matrix_name, ecode) ; in GB_stringify_sparsity()
77 char *matrix_name, // "C", "M", "A", or "B" in GB_macrofy_sparsity() argument
91 matrix_name, matrix_name, matrix_name, matrix_name) ; in GB_macrofy_sparsity()
100 matrix_name, matrix_name, matrix_name, matrix_name) ; in GB_macrofy_sparsity()
109 matrix_name, matrix_name, matrix_name, matrix_name) ; in GB_macrofy_sparsity()
118 matrix_name, matrix_name, matrix_name, matrix_name) ; in GB_macrofy_sparsity()
|
| /dports/math/suitesparse-btf/SuiteSparse-5.10.1/GraphBLAS/CUDA/ |
| H A D | GB_stringify_sparsity.c | 22 char *matrix_name, // "C", "M", "A", or "B" in GB_stringify_sparsity() argument
29 GB_macrofy_sparsity (sparsity_macros, matrix_name, ecode) ; in GB_stringify_sparsity()
77 char *matrix_name, // "C", "M", "A", or "B" in GB_macrofy_sparsity() argument
91 matrix_name, matrix_name, matrix_name, matrix_name) ; in GB_macrofy_sparsity()
100 matrix_name, matrix_name, matrix_name, matrix_name) ; in GB_macrofy_sparsity()
109 matrix_name, matrix_name, matrix_name, matrix_name) ; in GB_macrofy_sparsity()
118 matrix_name, matrix_name, matrix_name, matrix_name) ; in GB_macrofy_sparsity()
|
| /dports/math/suitesparse-amd/SuiteSparse-5.10.1/GraphBLAS/CUDA/ |
| H A D | GB_stringify_sparsity.c | 22 char *matrix_name, // "C", "M", "A", or "B" in GB_stringify_sparsity() argument
29 GB_macrofy_sparsity (sparsity_macros, matrix_name, ecode) ; in GB_stringify_sparsity()
77 char *matrix_name, // "C", "M", "A", or "B" in GB_macrofy_sparsity() argument
91 matrix_name, matrix_name, matrix_name, matrix_name) ; in GB_macrofy_sparsity()
100 matrix_name, matrix_name, matrix_name, matrix_name) ; in GB_macrofy_sparsity()
109 matrix_name, matrix_name, matrix_name, matrix_name) ; in GB_macrofy_sparsity()
118 matrix_name, matrix_name, matrix_name, matrix_name) ; in GB_macrofy_sparsity()
|
| /dports/math/suitesparse-ldl/SuiteSparse-5.10.1/GraphBLAS/CUDA/ |
| H A D | GB_stringify_sparsity.c | 22 char *matrix_name, // "C", "M", "A", or "B" in GB_stringify_sparsity() argument
29 GB_macrofy_sparsity (sparsity_macros, matrix_name, ecode) ; in GB_stringify_sparsity()
77 char *matrix_name, // "C", "M", "A", or "B" in GB_macrofy_sparsity() argument
91 matrix_name, matrix_name, matrix_name, matrix_name) ; in GB_macrofy_sparsity()
100 matrix_name, matrix_name, matrix_name, matrix_name) ; in GB_macrofy_sparsity()
109 matrix_name, matrix_name, matrix_name, matrix_name) ; in GB_macrofy_sparsity()
118 matrix_name, matrix_name, matrix_name, matrix_name) ; in GB_macrofy_sparsity()
|
| /dports/math/suitesparse-slip_lu/SuiteSparse-5.10.1/GraphBLAS/CUDA/ |
| H A D | GB_stringify_sparsity.c | 22 char *matrix_name, // "C", "M", "A", or "B" in GB_stringify_sparsity() argument
29 GB_macrofy_sparsity (sparsity_macros, matrix_name, ecode) ; in GB_stringify_sparsity()
77 char *matrix_name, // "C", "M", "A", or "B" in GB_macrofy_sparsity() argument
91 matrix_name, matrix_name, matrix_name, matrix_name) ; in GB_macrofy_sparsity()
100 matrix_name, matrix_name, matrix_name, matrix_name) ; in GB_macrofy_sparsity()
109 matrix_name, matrix_name, matrix_name, matrix_name) ; in GB_macrofy_sparsity()
118 matrix_name, matrix_name, matrix_name, matrix_name) ; in GB_macrofy_sparsity()
|
| /dports/math/suitesparse-mongoose/SuiteSparse-5.10.1/GraphBLAS/CUDA/ |
| H A D | GB_stringify_sparsity.c | 22 char *matrix_name, // "C", "M", "A", or "B" in GB_stringify_sparsity() argument
29 GB_macrofy_sparsity (sparsity_macros, matrix_name, ecode) ; in GB_stringify_sparsity()
77 char *matrix_name, // "C", "M", "A", or "B" in GB_macrofy_sparsity() argument
91 matrix_name, matrix_name, matrix_name, matrix_name) ; in GB_macrofy_sparsity()
100 matrix_name, matrix_name, matrix_name, matrix_name) ; in GB_macrofy_sparsity()
109 matrix_name, matrix_name, matrix_name, matrix_name) ; in GB_macrofy_sparsity()
118 matrix_name, matrix_name, matrix_name, matrix_name) ; in GB_macrofy_sparsity()
|
| /dports/math/suitesparse-rbio/SuiteSparse-5.10.1/GraphBLAS/CUDA/ |
| H A D | GB_stringify_sparsity.c | 22 char *matrix_name, // "C", "M", "A", or "B" in GB_stringify_sparsity() argument
29 GB_macrofy_sparsity (sparsity_macros, matrix_name, ecode) ; in GB_stringify_sparsity()
77 char *matrix_name, // "C", "M", "A", or "B" in GB_macrofy_sparsity() argument
91 matrix_name, matrix_name, matrix_name, matrix_name) ; in GB_macrofy_sparsity()
100 matrix_name, matrix_name, matrix_name, matrix_name) ; in GB_macrofy_sparsity()
109 matrix_name, matrix_name, matrix_name, matrix_name) ; in GB_macrofy_sparsity()
118 matrix_name, matrix_name, matrix_name, matrix_name) ; in GB_macrofy_sparsity()
|
| /dports/math/suitesparse-config/SuiteSparse-5.10.1/GraphBLAS/CUDA/ |
| H A D | GB_stringify_sparsity.c | 22 char *matrix_name, // "C", "M", "A", or "B" in GB_stringify_sparsity() argument
29 GB_macrofy_sparsity (sparsity_macros, matrix_name, ecode) ; in GB_stringify_sparsity()
77 char *matrix_name, // "C", "M", "A", or "B" in GB_macrofy_sparsity() argument
91 matrix_name, matrix_name, matrix_name, matrix_name) ; in GB_macrofy_sparsity()
100 matrix_name, matrix_name, matrix_name, matrix_name) ; in GB_macrofy_sparsity()
109 matrix_name, matrix_name, matrix_name, matrix_name) ; in GB_macrofy_sparsity()
118 matrix_name, matrix_name, matrix_name, matrix_name) ; in GB_macrofy_sparsity()
|
| /dports/math/suitesparse-ccolamd/SuiteSparse-5.10.1/GraphBLAS/CUDA/ |
| H A D | GB_stringify_sparsity.c | 22 char *matrix_name, // "C", "M", "A", or "B" in GB_stringify_sparsity() argument
29 GB_macrofy_sparsity (sparsity_macros, matrix_name, ecode) ; in GB_stringify_sparsity()
77 char *matrix_name, // "C", "M", "A", or "B" in GB_macrofy_sparsity() argument
91 matrix_name, matrix_name, matrix_name, matrix_name) ; in GB_macrofy_sparsity()
100 matrix_name, matrix_name, matrix_name, matrix_name) ; in GB_macrofy_sparsity()
109 matrix_name, matrix_name, matrix_name, matrix_name) ; in GB_macrofy_sparsity()
118 matrix_name, matrix_name, matrix_name, matrix_name) ; in GB_macrofy_sparsity()
|
| /dports/math/suitesparse-colamd/SuiteSparse-5.10.1/GraphBLAS/CUDA/ |
| H A D | GB_stringify_sparsity.c | 22 char *matrix_name, // "C", "M", "A", or "B" in GB_stringify_sparsity() argument
29 GB_macrofy_sparsity (sparsity_macros, matrix_name, ecode) ; in GB_stringify_sparsity()
77 char *matrix_name, // "C", "M", "A", or "B" in GB_macrofy_sparsity() argument
91 matrix_name, matrix_name, matrix_name, matrix_name) ; in GB_macrofy_sparsity()
100 matrix_name, matrix_name, matrix_name, matrix_name) ; in GB_macrofy_sparsity()
109 matrix_name, matrix_name, matrix_name, matrix_name) ; in GB_macrofy_sparsity()
118 matrix_name, matrix_name, matrix_name, matrix_name) ; in GB_macrofy_sparsity()
|
| /dports/math/suitesparse-cholmod/SuiteSparse-5.10.1/GraphBLAS/CUDA/ |
| H A D | GB_stringify_sparsity.c | 22 char *matrix_name, // "C", "M", "A", or "B" in GB_stringify_sparsity() argument
29 GB_macrofy_sparsity (sparsity_macros, matrix_name, ecode) ; in GB_stringify_sparsity()
77 char *matrix_name, // "C", "M", "A", or "B" in GB_macrofy_sparsity() argument
91 matrix_name, matrix_name, matrix_name, matrix_name) ; in GB_macrofy_sparsity()
100 matrix_name, matrix_name, matrix_name, matrix_name) ; in GB_macrofy_sparsity()
109 matrix_name, matrix_name, matrix_name, matrix_name) ; in GB_macrofy_sparsity()
118 matrix_name, matrix_name, matrix_name, matrix_name) ; in GB_macrofy_sparsity()
|
| /dports/math/suitesparse-spqr/SuiteSparse-5.10.1/GraphBLAS/CUDA/ |
| H A D | GB_stringify_sparsity.c | 22 char *matrix_name, // "C", "M", "A", or "B" in GB_stringify_sparsity() argument
29 GB_macrofy_sparsity (sparsity_macros, matrix_name, ecode) ; in GB_stringify_sparsity()
77 char *matrix_name, // "C", "M", "A", or "B" in GB_macrofy_sparsity() argument
91 matrix_name, matrix_name, matrix_name, matrix_name) ; in GB_macrofy_sparsity()
100 matrix_name, matrix_name, matrix_name, matrix_name) ; in GB_macrofy_sparsity()
109 matrix_name, matrix_name, matrix_name, matrix_name) ; in GB_macrofy_sparsity()
118 matrix_name, matrix_name, matrix_name, matrix_name) ; in GB_macrofy_sparsity()
|
| /dports/math/suitesparse-umfpack/SuiteSparse-5.10.1/GraphBLAS/CUDA/ |
| H A D | GB_stringify_sparsity.c | 22 char *matrix_name, // "C", "M", "A", or "B" in GB_stringify_sparsity() argument
29 GB_macrofy_sparsity (sparsity_macros, matrix_name, ecode) ; in GB_stringify_sparsity()
77 char *matrix_name, // "C", "M", "A", or "B" in GB_macrofy_sparsity() argument
91 matrix_name, matrix_name, matrix_name, matrix_name) ; in GB_macrofy_sparsity()
100 matrix_name, matrix_name, matrix_name, matrix_name) ; in GB_macrofy_sparsity()
109 matrix_name, matrix_name, matrix_name, matrix_name) ; in GB_macrofy_sparsity()
118 matrix_name, matrix_name, matrix_name, matrix_name) ; in GB_macrofy_sparsity()
|
| /dports/math/suitesparse-camd/SuiteSparse-5.10.1/GraphBLAS/CUDA/ |
| H A D | GB_stringify_sparsity.c | 22 char *matrix_name, // "C", "M", "A", or "B" in GB_stringify_sparsity() argument
29 GB_macrofy_sparsity (sparsity_macros, matrix_name, ecode) ; in GB_stringify_sparsity()
77 char *matrix_name, // "C", "M", "A", or "B" in GB_macrofy_sparsity() argument
91 matrix_name, matrix_name, matrix_name, matrix_name) ; in GB_macrofy_sparsity()
100 matrix_name, matrix_name, matrix_name, matrix_name) ; in GB_macrofy_sparsity()
109 matrix_name, matrix_name, matrix_name, matrix_name) ; in GB_macrofy_sparsity()
118 matrix_name, matrix_name, matrix_name, matrix_name) ; in GB_macrofy_sparsity()
|
| /dports/math/suitesparse-cxsparse/SuiteSparse-5.10.1/GraphBLAS/CUDA/ |
| H A D | GB_stringify_sparsity.c | 22 char *matrix_name, // "C", "M", "A", or "B" in GB_stringify_sparsity() argument
29 GB_macrofy_sparsity (sparsity_macros, matrix_name, ecode) ; in GB_stringify_sparsity()
77 char *matrix_name, // "C", "M", "A", or "B" in GB_macrofy_sparsity() argument
91 matrix_name, matrix_name, matrix_name, matrix_name) ; in GB_macrofy_sparsity()
100 matrix_name, matrix_name, matrix_name, matrix_name) ; in GB_macrofy_sparsity()
109 matrix_name, matrix_name, matrix_name, matrix_name) ; in GB_macrofy_sparsity()
118 matrix_name, matrix_name, matrix_name, matrix_name) ; in GB_macrofy_sparsity()
|
| /dports/math/suitesparse-graphblas/SuiteSparse-5.10.1/GraphBLAS/CUDA/ |
| H A D | GB_stringify_sparsity.c | 22 char *matrix_name, // "C", "M", "A", or "B" in GB_stringify_sparsity() argument
29 GB_macrofy_sparsity (sparsity_macros, matrix_name, ecode) ; in GB_stringify_sparsity()
77 char *matrix_name, // "C", "M", "A", or "B" in GB_macrofy_sparsity() argument
91 matrix_name, matrix_name, matrix_name, matrix_name) ; in GB_macrofy_sparsity()
100 matrix_name, matrix_name, matrix_name, matrix_name) ; in GB_macrofy_sparsity()
109 matrix_name, matrix_name, matrix_name, matrix_name) ; in GB_macrofy_sparsity()
118 matrix_name, matrix_name, matrix_name, matrix_name) ; in GB_macrofy_sparsity()
|
| /dports/biology/ncbi-toolkit/ncbi/algo/blast/core/ |
| H A D | matrix_freq_ratios.c | 1643 _PSIMatrixFrequencyRatiosNew(const char* matrix_name) in _PSIMatrixFrequencyRatiosNew() argument
1648 ASSERT(matrix_name); in _PSIMatrixFrequencyRatiosNew()
1661 if ( !strcasecmp(matrix_name, "BLOSUM62") || in _PSIMatrixFrequencyRatiosNew()
1662 !strcasecmp(matrix_name, "BLOSUM62_20")) { in _PSIMatrixFrequencyRatiosNew()
1685 } else if ( !strcasecmp(matrix_name, "BLOSUM45") ) { in _PSIMatrixFrequencyRatiosNew()
1692 } else if ( !strcasecmp(matrix_name, "BLOSUM80") ) { in _PSIMatrixFrequencyRatiosNew()
1699 } else if ( !strcasecmp(matrix_name, "BLOSUM50") ) { in _PSIMatrixFrequencyRatiosNew()
1706 } else if ( !strcasecmp(matrix_name, "BLOSUM90") ) { in _PSIMatrixFrequencyRatiosNew()
1713 } else if ( !strcasecmp(matrix_name, "PAM30") ) { in _PSIMatrixFrequencyRatiosNew()
1720 } else if ( !strcasecmp(matrix_name, "PAM70") ) { in _PSIMatrixFrequencyRatiosNew()
[all …]
|
| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/core/ |
| H A D | matrix_freq_ratios.c | 1643 _PSIMatrixFrequencyRatiosNew(const char* matrix_name) in _PSIMatrixFrequencyRatiosNew() argument
1648 ASSERT(matrix_name); in _PSIMatrixFrequencyRatiosNew()
1661 if ( !strcasecmp(matrix_name, "BLOSUM62") || in _PSIMatrixFrequencyRatiosNew()
1662 !strcasecmp(matrix_name, "BLOSUM62_20")) { in _PSIMatrixFrequencyRatiosNew()
1685 } else if ( !strcasecmp(matrix_name, "BLOSUM45") ) { in _PSIMatrixFrequencyRatiosNew()
1692 } else if ( !strcasecmp(matrix_name, "BLOSUM80") ) { in _PSIMatrixFrequencyRatiosNew()
1699 } else if ( !strcasecmp(matrix_name, "BLOSUM50") ) { in _PSIMatrixFrequencyRatiosNew()
1706 } else if ( !strcasecmp(matrix_name, "BLOSUM90") ) { in _PSIMatrixFrequencyRatiosNew()
1713 } else if ( !strcasecmp(matrix_name, "PAM30") ) { in _PSIMatrixFrequencyRatiosNew()
1720 } else if ( !strcasecmp(matrix_name, "PAM70") ) { in _PSIMatrixFrequencyRatiosNew()
[all …]
|
| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/core/ |
| H A D | matrix_freq_ratios.c | 1643 _PSIMatrixFrequencyRatiosNew(const char* matrix_name) in _PSIMatrixFrequencyRatiosNew() argument
1648 ASSERT(matrix_name); in _PSIMatrixFrequencyRatiosNew()
1661 if ( !strcasecmp(matrix_name, "BLOSUM62") || in _PSIMatrixFrequencyRatiosNew()
1662 !strcasecmp(matrix_name, "BLOSUM62_20")) { in _PSIMatrixFrequencyRatiosNew()
1685 } else if ( !strcasecmp(matrix_name, "BLOSUM45") ) { in _PSIMatrixFrequencyRatiosNew()
1692 } else if ( !strcasecmp(matrix_name, "BLOSUM80") ) { in _PSIMatrixFrequencyRatiosNew()
1699 } else if ( !strcasecmp(matrix_name, "BLOSUM50") ) { in _PSIMatrixFrequencyRatiosNew()
1706 } else if ( !strcasecmp(matrix_name, "BLOSUM90") ) { in _PSIMatrixFrequencyRatiosNew()
1713 } else if ( !strcasecmp(matrix_name, "PAM30") ) { in _PSIMatrixFrequencyRatiosNew()
1720 } else if ( !strcasecmp(matrix_name, "PAM70") ) { in _PSIMatrixFrequencyRatiosNew()
[all …]
|
| /dports/biology/ncbi-toolkit/ncbi/algo/blast/composition_adjustment/ |
| H A D | matrix_frequency_data.c | 1373 int Blast_FrequencyDataIsAvailable(const char *matrix_name) in Blast_FrequencyDataIsAvailable() argument
1375 return NULL != s_LocateFrequencyData(matrix_name); in Blast_FrequencyDataIsAvailable()
1381 Blast_GetMatrixBackgroundFreq(const char *matrix_name) in Blast_GetMatrixBackgroundFreq() argument
1383 Compo_FrequencyData * data = s_LocateFrequencyData(matrix_name); in Blast_GetMatrixBackgroundFreq()
1388 "for RE based adjustment\n", matrix_name); in Blast_GetMatrixBackgroundFreq()
1397 double col_sums[], const char *matrix_name) in Blast_GetJointProbsForMatrix() argument
1400 Compo_FrequencyData * data = s_LocateFrequencyData(matrix_name); in Blast_GetJointProbsForMatrix()
1403 "for RE based adjustment\n", matrix_name); in Blast_GetJointProbsForMatrix()
|
| H A D | compo_mode_condition.c | 103 const char *matrix_name) in s_NeverAdjustMatrix() argument
110 (void) matrix_name; in s_NeverAdjustMatrix()
120 const char *matrix_name) in s_JustScaleOldMatrix() argument
127 (void) matrix_name; in s_JustScaleOldMatrix()
141 const char *matrix_name) in s_TestToApplyREAdjustmentUnconditional() argument
148 (void) matrix_name; in s_TestToApplyREAdjustmentUnconditional()
164 const char *matrix_name) in s_TestToApplyREAdjustmentConditional() argument
188 p_matrix = Blast_GetMatrixBackgroundFreq(matrix_name); in s_TestToApplyREAdjustmentConditional()
|
| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/composition_adjustment/ |
| H A D | matrix_frequency_data.c | 1373 int Blast_FrequencyDataIsAvailable(const char *matrix_name) in Blast_FrequencyDataIsAvailable() argument
1375 return NULL != s_LocateFrequencyData(matrix_name); in Blast_FrequencyDataIsAvailable()
1381 Blast_GetMatrixBackgroundFreq(const char *matrix_name) in Blast_GetMatrixBackgroundFreq() argument
1383 Compo_FrequencyData * data = s_LocateFrequencyData(matrix_name); in Blast_GetMatrixBackgroundFreq()
1388 "for RE based adjustment\n", matrix_name); in Blast_GetMatrixBackgroundFreq()
1397 double col_sums[], const char *matrix_name) in Blast_GetJointProbsForMatrix() argument
1400 Compo_FrequencyData * data = s_LocateFrequencyData(matrix_name); in Blast_GetJointProbsForMatrix()
1403 "for RE based adjustment\n", matrix_name); in Blast_GetJointProbsForMatrix()
|
| H A D | compo_mode_condition.c | 103 const char *matrix_name) in s_NeverAdjustMatrix() argument
110 (void) matrix_name; in s_NeverAdjustMatrix()
120 const char *matrix_name) in s_JustScaleOldMatrix() argument
127 (void) matrix_name; in s_JustScaleOldMatrix()
141 const char *matrix_name) in s_TestToApplyREAdjustmentUnconditional() argument
148 (void) matrix_name; in s_TestToApplyREAdjustmentUnconditional()
164 const char *matrix_name) in s_TestToApplyREAdjustmentConditional() argument
188 p_matrix = Blast_GetMatrixBackgroundFreq(matrix_name); in s_TestToApplyREAdjustmentConditional()
|
| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/composition_adjustment/ |
| H A D | matrix_frequency_data.c | 1373 int Blast_FrequencyDataIsAvailable(const char *matrix_name) in Blast_FrequencyDataIsAvailable() argument
1375 return NULL != s_LocateFrequencyData(matrix_name); in Blast_FrequencyDataIsAvailable()
1381 Blast_GetMatrixBackgroundFreq(const char *matrix_name) in Blast_GetMatrixBackgroundFreq() argument
1383 Compo_FrequencyData * data = s_LocateFrequencyData(matrix_name); in Blast_GetMatrixBackgroundFreq()
1388 "for RE based adjustment\n", matrix_name); in Blast_GetMatrixBackgroundFreq()
1397 double col_sums[], const char *matrix_name) in Blast_GetJointProbsForMatrix() argument
1400 Compo_FrequencyData * data = s_LocateFrequencyData(matrix_name); in Blast_GetJointProbsForMatrix()
1403 "for RE based adjustment\n", matrix_name); in Blast_GetJointProbsForMatrix()
|