Searched refs:maxDp (Results 1 – 6 of 6) sorted by relevance
| /dports/biology/bowtie2/bowtie2-2.4.4/ |
| H A D | aligner_sw_driver.h | 340 size_t maxDp, // max # DPs
395 size_t maxDp, // max # DPs
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| H A D | aligner_sw_driver.cpp | 774 size_t maxDp, // stop after this many dps in extendSeeds() argument
912 if(prm.nExDps >= maxDp || prm.nMateDps >= maxDp) { in extendSeeds()
1411 size_t maxDp, // stop after this many dps in extendSeedsPaired()
1598 if(prm.nExDps >= maxDp || prm.nMateDps >= maxDp) { in extendSeedsPaired()
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| H A D | bt2_search.cpp | 228 static size_t maxDp; // stop after this many DPs variable
429 maxDp = 300; // stop after this many dp extends in resetOptions()
1234 maxDp = parse<size_t>(arg); in parseOption()
3330 size_t mxDp[2] = { maxDp, maxDp }; in multiseedSearchWorker()
4373 size_t mxDp[2] = { maxDp, maxDp }; in multiseedSearchWorker_2p5()
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| /dports/biology/hisat2/hisat2-2.2.1/ |
| H A D | aligner_sw_driver.h | 352 size_t maxDp, // max # DPs
407 size_t maxDp, // max # DPs
1298 size_t maxDp, // stop after this many dps in extendSeeds() argument
1437 if(prm.nExDps >= maxDp || prm.nMateDps >= maxDp) { in extendSeeds()
1939 size_t maxDp, // stop after this many dps in extendSeedsPaired()
2127 if(prm.nExDps >= maxDp || prm.nMateDps >= maxDp) { in extendSeedsPaired()
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| H A D | hisat_bp.cpp | 214 static size_t maxDp; // stop after this many DPs variable
414 maxDp = 300; // stop after this many dp extends in resetOptions()
1130 maxDp = parse<size_t>(arg); in parseOption()
3153 size_t mxDp[2] = { maxDp, maxDp }; in multiseedSearchWorker_hisat_bp()
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| H A D | hisat2.cpp | 218 static size_t maxDp; // stop after this many DPs variable
460 maxDp = 300; // stop after this many dp extends in resetOptions()
1285 maxDp = parse<size_t>(arg); in parseOption()
3479 size_t mxDp[2] = { maxDp, maxDp }; in multiseedSearchWorker_hisat2()
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