Searched refs:maxEdits2 (Results 1 – 2 of 2) sorted by relevance
| /dports/biology/bbmap/bbmap/current/jgi/ |
| H A D | IdentityMatrix.java | 220 maxEdits2=Tools.min(maxEdits, longestSequence); in ProcessThread()
221 int width=Tools.min(maxEdits2*2+1, maxWidth); in ProcessThread()
249 int edits=bandy.alignQuadrupleProgressive(r1.bases, r2.bases, 10, maxEdits2, false); in run()
282 private final int maxEdits2; field in IdentityMatrix.ProcessThread
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| H A D | KExpand.java | 624 final int maxEdits2=maxEdits-1; in mutateSDI() local
638 added+=mutateSDI(temp, rtemp, len, maxEdits2, in mutateSDI()
651 added+=mutateSDI(temp, rtemp, len, maxEdits2, in mutateSDI()
666 added+=mutateSDI(temp, rtemp, len, maxEdits2, in mutateSDI()
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