Searched refs:maxMismatchQualSum (Results 1 – 10 of 10) sorted by relevance
| /dports/biology/seqan1/seqan-1.3.1/apps/razers/ |
| H A D | razers.cpp | 335 …ption("smq","seed-mism-quality", OptionType::Int | OptionType::Label, options.maxMismatchQualSum)); in main()
390 getOptionValueLong(parser, "seed-mism-quality", options.maxMismatchQualSum); in main()
488 if ((options.maxMismatchQualSum < 0) && (stop = true)) in main()
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| H A D | razers.h | 112 int maxMismatchQualSum; member
189 maxMismatchQualSum = 70; in RazerSOptions()
1516 if(qualSumErrors > options.maxMismatchQualSum)
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| /dports/biology/seqan1/seqan-1.3.1/apps/splazers/ |
| H A D | splazers.cpp | 361 …ption("smq","seed-mism-quality", OptionType::Int | OptionType::Label, options.maxMismatchQualSum)); in main()
408 getOptionValueLong(parser, "seed-mism-quality", options.maxMismatchQualSum); in main()
514 if ((options.maxMismatchQualSum < 0) && (stop = true)) in main()
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| H A D | razers.h | 112 int maxMismatchQualSum; member
194 maxMismatchQualSum = 70; in RazerSOptions()
1537 if(qualSumErrors > options.maxMismatchQualSum)
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| /dports/biology/seqan1/seqan-1.3.1/apps/razers2/ |
| H A D | razers.cpp | 372 getOptionValueLong(parser, "seed-mism-quality", options.maxMismatchQualSum); in main()
461 if ((options.maxMismatchQualSum < 0) && (stop = true)) in main()
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| H A D | razers.h | 108 int maxMismatchQualSum; member
179 maxMismatchQualSum = 70; in RazerSOptions()
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| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/apps/razers/ |
| H A D | razers.cpp | 348 setDefaultValue(parser, "seed-mism-quality", options.maxMismatchQualSum)); in setUpArgumentParser()
473 getOptionValue(options.maxMismatchQualSum, parser, "seed-mism-quality"); in extractOptions()
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| H A D | razers.h | 122 int maxMismatchQualSum; member
203 maxMismatchQualSum = 70; in RazerSOptions()
1569 if(qualSumErrors > options.maxMismatchQualSum)
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| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/apps/splazers/ |
| H A D | splazers.cpp | 446 setDefaultValue(parser, "seed-mism-quality", options.maxMismatchQualSum)); in main()
502 getOptionValue(options.maxMismatchQualSum, parser, "seed-mism-quality"); in main()
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| H A D | razers.h | 116 int maxMismatchQualSum; member
204 maxMismatchQualSum = 70; in RazerSOptions()
1528 if(qualSumErrors > options.maxMismatchQualSum)
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