Searched refs:max_non_ref_ac (Results 1 – 4 of 4) sorted by relevance
| /dports/biology/vcftools/vcftools-0.1.16/src/cpp/ |
| H A D | parameters.cpp | 64 max_non_ref_ac = numeric_limits<int>::max(); in parameters()
287 …else if (in_str == "--max-non-ref-ac") { max_non_ref_ac = atoi(get_arg(i+1).c_str()); i++; } // M… in read_parameters()
439 …if (max_non_ref_ac != defaults.max_non_ref_ac) LOG.printLOG("\t--max-non-ref-ac " + output_log::db… in print_params()
710 …if (max_non_ref_ac < min_non_ref_ac) error("Maximum Non-Ref Allele Count must not be less that Min… in check_parameters()
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| H A D | entry_filters.cpp | 54 …_count(params.min_mac, params.max_mac, params.min_non_ref_ac, params.max_non_ref_ac, params.min_no… in apply_filters()
870 double min_non_ref_ac, double max_non_ref_ac, in filter_sites_by_allele_count() argument
879 (min_non_ref_ac <= 0) && (max_non_ref_ac == numeric_limits<int>::max()) && in filter_sites_by_allele_count()
905 if ((ui > 0) && ((allele_counts[ui] < min_non_ref_ac) || (allele_counts[ui] > max_non_ref_ac))) in filter_sites_by_allele_count()
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| H A D | parameters.h | 91 int max_non_ref_ac; variable
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| H A D | entry.h | 52 …_count(double min_mac, double max_mac, double min_non_ref_ac, double max_non_ref_ac, double min_no…
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