/dports/misc/elki/elki-release0.7.1-1166-gfb1fffdf3/addons/xtree/src/main/java/de/lmu/ifi/dbs/elki/index/tree/spatial/rstarvariants/xtree/ |
H A D | XTreeHeader.java | 51 private float max_overlap = (float) .2; field in XTreeHeader 70 …nimum, int leafMinimum, int min_fanout, long num_elements, int dimensionality, float max_overlap) { in XTreeHeader() argument 75 this.max_overlap = max_overlap; in XTreeHeader() 94 this.max_overlap = file.readFloat(); in readHeader() 112 file.writeFloat(max_overlap); in writeHeader() 128 return max_overlap; in getMaxOverlap()
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H A D | XTreeSettings.java | 50 public float max_overlap = .2f; field in XTreeSettings
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/dports/biology/abyss/abyss-2.3.1/GapFiller/ |
H A D | gapfill.cpp | 171 if (seg1.size() > opt::max_overlap) in alignReadToGapFlanks() 172 a = seg1.substr(seg1.size() - opt::max_overlap); in alignReadToGapFlanks() 173 if (read.size() > opt::max_overlap) in alignReadToGapFlanks() 174 b = read.substr(0, opt::max_overlap); in alignReadToGapFlanks() 185 if (read.size() > opt::max_overlap) in alignReadToGapFlanks() 186 a = read.substr(read.size() - opt::max_overlap); in alignReadToGapFlanks() 187 if (seg2.size() > opt::max_overlap) in alignReadToGapFlanks() 188 b = seg2.substr(0, opt::max_overlap); in alignReadToGapFlanks() 227 int seg1_start = max(0, (int)(gap.first - opt::max_overlap)); in alignReadsToGapFlanks() 233 gap.second + opt::max_overlap); in alignReadsToGapFlanks()
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H A D | gapfill.h | 8 static unsigned max_overlap = 500; variable 44 opt::max_overlap + opt::min_matches); in isNearGap()
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/dports/biology/p5-BioPerl/BioPerl-1.7.7/lib/Bio/Search/ |
H A D | BlastUtils.pm | 146 my $max_overlap = $sbjct->{'_overlap'}; 163 …$qoverlap = &_adjust_contigs('query', $hsp, $qstart, $qstop, \@qcontigs, $max_overlap, $frame, $qs… 166 …$soverlap = &_adjust_contigs('sbjct', $hsp, $sstart, $sstop, \@scontigs, $max_overlap, $frame, $ss… 285 my ($seqType, $hsp, $start, $stop, $contigs_ref, $max_overlap, $frame, $strand) = @_; 305 if($start < $_->{'start'} and $stop > ($_->{'start'} + $max_overlap)) { 323 if($stop > $_->{'stop'} and $start < ($_->{'stop'} - $max_overlap)) {
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H A D | SearchUtils.pm | 171 my $max_overlap = $sbjct->overlap; 201 \@qcontigs, $max_overlap, $frame, 207 \@scontigs, $max_overlap, $frame, 388 $max_overlap, $frame, $strand) = @_; 403 if ($start < $_->{'start'} && $stop >= ($_->{'start'} + $max_overlap - 1)) { 428 if ($stop > $_->{'stop'} and $start <= ($_->{'stop'} - $max_overlap + 1)) { 466 if ($u_start < $i_start && $u_stop >= ($i_start + $max_overlap - 1)) { 503 elsif ($u_stop > $i_stop && $u_start <= ($i_stop - $max_overlap + 1)) {
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/dports/textproc/p5-KinoSearch1/KinoSearch1-1.01/lib/KinoSearch1/Search/ |
H A D | Similarity.pm | 191 coord(sim, overlap, max_overlap) 194 U32 max_overlap; 196 RETVAL = sim->coord(sim, overlap, max_overlap); 326 Kino1_Sim_coord(Similarity *sim, U32 overlap, U32 max_overlap) { 327 if (max_overlap == 0) 329 return (float)overlap / (float)max_overlap;
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/dports/biology/flash/FLASH-1.2.11/ |
H A D | flash.c | 818 long_overlap_percent, max_overlap, max_overlap); in warn_about_long_overlaps() 830 .max_overlap = 0, in main() 885 alg_params.max_overlap = strtol(optarg, &tmp, 10); in main() 886 if (tmp == optarg || *tmp || alg_params.max_overlap < 1) in main() 1071 alg_params.max_overlap = (int)(2 * read_len - fragment_len + in main() 1087 alg_params.max_overlap); in main() 1096 alg_params.max_overlap); in main() 1101 if (alg_params.max_overlap < alg_params.min_overlap) { in main() 1107 alg_params.max_overlap, alg_params.min_overlap); in main() 1214 alg_params.max_overlap); in main() [all …]
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H A D | combine_reads.c | 249 int min_overlap, int max_overlap, float max_mismatch_density, in pair_align() argument 286 float score_len = (float)min(overlap_len, max_overlap); in pair_align() 466 params->max_overlap, in combine_reads()
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H A D | combine_reads.h | 15 int max_overlap; member
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/dports/graphics/graphviz/graphviz-2.44.1/lib/neatogen/ |
H A D | overlap.c | 378 real *max_overlap, real *min_overlap, in OverlapSmoother_new() argument 438 …ideal_distance_avoid_overlap(dim, sm->Lwd, x, width, (real*) (sm->Lwd->a), max_overlap, min_overla… in OverlapSmoother_new() 441 if (*max_overlap < 1 && shrink){ in OverlapSmoother_new() 442 real scale_sta = MIN(1, *max_overlap*1.0001), scale_sto = 1; in OverlapSmoother_new() 444 … if (Verbose) fprintf(stderr," no overlap (overlap = %f), rescale to shrink\n", *max_overlap - 1); in OverlapSmoother_new() 448 *max_overlap = 1; in OverlapSmoother_new() 547 static int check_convergence(real max_overlap, real res, int has_penalty_terms, real epsilon){ in check_convergence() argument 548 if (!has_penalty_terms) return (max_overlap <= 1); in check_convergence() 571 real max_overlap = 0, min_overlap = 999; in remove_overlap() local 622 …&max_overlap, &min_overlap, edge_labeling_scheme, n_constr_nodes, constr_nodes, A_constr, shrink); in remove_overlap() [all …]
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H A D | overlap.h | 27 real *max_overlap, real *min_overlap,
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/dports/biology/abyss/abyss-2.3.1/DAssembler/ |
H A D | DAssembler.cpp | 28 static unsigned max_overlap = 10; variable 202 || new_overlap > opt::max_overlap) in find_complex_overlap() 399 case 'o': arg >> opt::max_overlap; break; in main() 419 } else if (opt::max_overlap > (opt::read_length-1)){ in main() 434 "\n max_overlap: " << opt::max_overlap << in main() 540 cout << ">p" << opt::max_overlap << "_" << in main()
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/dports/comms/gnuradio/gnuradio-3.8.4.0/gr-digital/python/digital/utils/ |
H A D | alignment.py | 117 max_overlap = max(len(d1), len(d2)) 119 indices = random_sample(max_overlap, num_samples, seed)
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/dports/misc/py-mxnet/incubator-mxnet-1.9.0/src/operator/contrib/ |
H A D | multibox_target.cc | 115 float max_overlap = 1e-6; // start with a very small positive overlap in MultiBoxTargetForward() local 126 if (iou > max_overlap) { in MultiBoxTargetForward() 129 max_overlap = iou; in MultiBoxTargetForward() 140 max_matches[best_anchor].first = max_overlap; in MultiBoxTargetForward()
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/dports/misc/mxnet/incubator-mxnet-1.9.0/src/operator/contrib/ |
H A D | multibox_target.cc | 115 float max_overlap = 1e-6; // start with a very small positive overlap in MultiBoxTargetForward() local 126 if (iou > max_overlap) { in MultiBoxTargetForward() 129 max_overlap = iou; in MultiBoxTargetForward() 140 max_matches[best_anchor].first = max_overlap; in MultiBoxTargetForward()
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/dports/misc/py-orange3-timeseries/orange3-timeseries-0.3.10/orangecontrib/timeseries/widgets/ |
H A D | owtimeslice.py | 510 max_overlap = k 518 max_overlap = k 523 max_overlap = k 527 *_, max_overlap = self.STEP_SIZES.keys() 536 while next_item != max_overlap:
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/dports/net/waypipe/waypipe-a11a59c58bee3972ce9e1e18731eba28cc0a8f0a/protocols/ |
H A D | symgen.py | 71 max_overlap = 0 76 if d >= max_overlap: 77 max_overlap = d
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/dports/x11-wm/mutter/mutter-41.1/cogl/cogl/ |
H A D | cogl-xlib-renderer.c | 607 int max_overlap = 0; in _cogl_xlib_renderer_output_for_rectangle() local 625 if (overlap > max_overlap) in _cogl_xlib_renderer_output_for_rectangle() 627 max_overlap = overlap; in _cogl_xlib_renderer_output_for_rectangle()
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/dports/graphics/cogl/cogl-1.22.8/cogl/ |
H A D | cogl-xlib-renderer.c | 641 int max_overlap = 0; in _cogl_xlib_renderer_output_for_rectangle() local 659 if (overlap > max_overlap) in _cogl_xlib_renderer_output_for_rectangle() 661 max_overlap = overlap; in _cogl_xlib_renderer_output_for_rectangle()
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/dports/x11-wm/muffin/muffin-4.8.0/cogl/cogl/ |
H A D | cogl-xlib-renderer.c | 638 int max_overlap = 0; in _cogl_xlib_renderer_output_for_rectangle() local 656 if (overlap > max_overlap) in _cogl_xlib_renderer_output_for_rectangle() 658 max_overlap = overlap; in _cogl_xlib_renderer_output_for_rectangle()
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/dports/devel/hyperscan/hyperscan-5.4.0/src/rose/ |
H A D | rose_build_misc.cpp | 297 size_t max_overlap = 0; in findNonOverlappingTail() local 302 max_overlap = max(max_overlap, overlap); in findNonOverlappingTail() 306 ue2_literal tail = s.substr(max_overlap); in findNonOverlappingTail() 307 DEBUG_PRINTF("%zu overlap, tail: '%s'\n", max_overlap, in findNonOverlappingTail()
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/dports/math/gap/gap-4.11.0/pkg/semigroups-3.2.3/libsemigroups/docs/docs/yml/ |
H A D | fpsemigroup_knuth_bendix.yml | 54 - max_overlap
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/dports/games/renpy/renpy-7.4.11-sdk/renpy/display/ |
H A D | dragdrop.py | 900 max_overlap = 0 924 overlap >= max_overlap and 929 max_overlap = overlap 931 if max_overlap <= 0:
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/dports/science/cp2k/cp2k-2e995eec7fd208c8a72d9544807bd8b8ba8cd1cc/src/ |
H A D | xas_tp_scf.F | 410 REAL(KIND=dp) :: component, dist, max_overlap, ra(3), & local 516 max_overlap = 0.0_dp 540 IF (sto_state_overlap .GT. max_overlap) THEN 541 max_overlap = sto_state_overlap
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