| /dports/biology/seqan1/seqan-1.3.1/lib/samtools/ |
| H A D | bam2bcf_indel.c | 115 int i, s, j, k, t, n_types, *types, max_rd_len, left, right, max_ins, *score1, *score2, max_ref2; in bcf_call_gap_prep() local
239 max_ref2 = right - left + 2 + 2 * (max_ins > -types[0]? max_ins : -types[0]); in bcf_call_gap_prep()
240 ref2 = calloc(max_ref2, 1); in bcf_call_gap_prep()
268 for (; k < max_ref2; ++k) ref2[k] = 4; in bcf_call_gap_prep()
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| /dports/biology/ugene/ugene-40.1/src/libs_3rdparty/samtools/src/samtools/ |
| H A D | bam2bcf_indel.c | 115 int i, s, j, k, t, n_types, *types, max_rd_len, left, right, max_ins, *score1, *score2, max_ref2; in bcf_call_gap_prep() local
296 max_ref2 = right - left + 2 + 2 * (max_ins > -types[0]? max_ins : -types[0]); in bcf_call_gap_prep()
297 ref2 = calloc(max_ref2, 1); in bcf_call_gap_prep()
322 for (; k < max_ref2; ++k) ref2[k] = 4; in bcf_call_gap_prep()
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| /dports/biology/py-pysam/pysam-0.18.0/samtools/ |
| H A D | bam2bcf_indel.c | 154 int s, k, t, n_types, *types, max_rd_len, max_ins, *score1, *score2, max_ref2; in bcf_call_gap_prep() local
357 max_ref2 = right - left + 2 + 2 * (max_ins > -types[0]? max_ins : -types[0]); in bcf_call_gap_prep()
358 ref2 = calloc(max_ref2, 1); in bcf_call_gap_prep()
383 for (; k < max_ref2; ++k) ref2[k] = 4; in bcf_call_gap_prep()
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| H A D | bam2bcf_indel.c.pysam.c | 156 int s, k, t, n_types, *types, max_rd_len, max_ins, *score1, *score2, max_ref2; in bcf_call_gap_prep() local
359 max_ref2 = right - left + 2 + 2 * (max_ins > -types[0]? max_ins : -types[0]); in bcf_call_gap_prep()
360 ref2 = calloc(max_ref2, 1); in bcf_call_gap_prep()
385 for (; k < max_ref2; ++k) ref2[k] = 4; in bcf_call_gap_prep()
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| /dports/biology/samtools/samtools-1.14/ |
| H A D | bam2bcf_indel.c | 154 int s, k, t, n_types, *types, max_rd_len, max_ins, *score1, *score2, max_ref2; in bcf_call_gap_prep() local
357 max_ref2 = right - left + 2 + 2 * (max_ins > -types[0]? max_ins : -types[0]); in bcf_call_gap_prep()
358 ref2 = calloc(max_ref2, 1); in bcf_call_gap_prep()
383 for (; k < max_ref2; ++k) ref2[k] = 4; in bcf_call_gap_prep()
|
| /dports/biology/bcftools/bcftools-1.14/ |
| H A D | bam2bcf_indel.c | 700 int *score, max_ref2; in bcf_call_gap_prep() local
755 max_ref2 = right - left + 2 + 2 * (max_ins > -types[0]? max_ins : -types[0]); in bcf_call_gap_prep()
756 ref2 = (char*) calloc(max_ref2, 1); in bcf_call_gap_prep()
803 for (; k < max_ref2; ++k) in bcf_call_gap_prep()
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| /dports/biology/bio-mocha/bcftools-1.14/ |
| H A D | bam2bcf_indel.c | 700 int *score, max_ref2; in bcf_call_gap_prep() local
755 max_ref2 = right - left + 2 + 2 * (max_ins > -types[0]? max_ins : -types[0]); in bcf_call_gap_prep()
756 ref2 = (char*) calloc(max_ref2, 1); in bcf_call_gap_prep()
803 for (; k < max_ref2; ++k) in bcf_call_gap_prep()
|
| /dports/biology/py-pysam/pysam-0.18.0/bcftools/ |
| H A D | bam2bcf_indel.c | 700 int *score, max_ref2; in bcf_call_gap_prep() local
755 max_ref2 = right - left + 2 + 2 * (max_ins > -types[0]? max_ins : -types[0]); in bcf_call_gap_prep()
756 ref2 = (char*) calloc(max_ref2, 1); in bcf_call_gap_prep()
803 for (; k < max_ref2; ++k) in bcf_call_gap_prep()
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| H A D | bam2bcf_indel.c.pysam.c | 702 int *score, max_ref2; in bcf_call_gap_prep() local
757 max_ref2 = right - left + 2 + 2 * (max_ins > -types[0]? max_ins : -types[0]); in bcf_call_gap_prep()
758 ref2 = (char*) calloc(max_ref2, 1); in bcf_call_gap_prep()
805 for (; k < max_ref2; ++k) in bcf_call_gap_prep()
|