| /dports/biology/infernal/infernal-1.1.3/easel/ |
| H A D | esl_sqio.h | 61 …int (*read_block) (struct esl_sqio_s *sqfp, ESL_SQ_BLOCK *sqBlock, int max_residues, int ma…
135 extern int esl_sqio_ReadBlock (ESL_SQFILE *sqfp, ESL_SQ_BLOCK *sqBlock, int max_residues, int m…
|
| H A D | esl_sqio_ncbi.c | 1189 if (max_residues < 0) in sqncbi_ReadBlock()
1190 max_residues = MAX_RESIDUE_COUNT; in sqncbi_ReadBlock()
1199 status = sqncbi_ReadWindow(sqfp, sqBlock->list->C, max_residues, sqBlock->list); in sqncbi_ReadBlock()
1205 if (sqBlock->list->n >= max_residues) in sqncbi_ReadBlock()
1213 status = sqncbi_ReadWindow(sqfp, 0, max_residues, tmpsq); // burn off the EOD in sqncbi_ReadBlock()
1231 status = sqncbi_ReadWindow(sqfp, 0, max_residues, tmpsq); in sqncbi_ReadBlock()
1251 for ( ; i < sqBlock->listSize && size < max_residues; ++i) in sqncbi_ReadBlock()
1258 int request_size = ESL_MAX(max_residues-size, max_residues * .05); in sqncbi_ReadBlock()
1269 if (size >= max_residues) in sqncbi_ReadBlock()
1277 status = sqncbi_ReadWindow(sqfp, 0, max_residues, tmpsq); // burn off the EOD in sqncbi_ReadBlock()
[all …]
|
| H A D | esl_sqio_ascii.c | 48 static int sqascii_ReadBlock (ESL_SQFILE *sqfp, ESL_SQ_BLOCK *sqBlock, int max_residues, int…
1439 sqascii_ReadBlock(ESL_SQFILE *sqfp, ESL_SQ_BLOCK *sqBlock, int max_residues, int max_sequences, int… in sqascii_ReadBlock() argument
1467 if (max_residues < 1) in sqascii_ReadBlock()
1468 max_residues = MAX_RESIDUE_COUNT; in sqascii_ReadBlock()
1476 status = sqascii_ReadWindow(sqfp, sqBlock->list->C, max_residues, sqBlock->list); in sqascii_ReadBlock()
1482 if (size == max_residues) in sqascii_ReadBlock()
1501 status = sqascii_ReadWindow(sqfp, 0, max_residues, tmpsq); in sqascii_ReadBlock()
1520 for ( ; i < max_sequences && size < max_residues; ++i) { in sqascii_ReadBlock()
1526 int request_size = ESL_MAX(max_residues-size, max_residues * .05); in sqascii_ReadBlock()
1540 if (size >= max_residues) { in sqascii_ReadBlock()
[all …]
|
| H A D | esl_sqio.c | 525 esl_sqio_ReadBlock(ESL_SQFILE *sqfp, ESL_SQ_BLOCK *sqBlock, int max_residues, int max_sequences, in… in esl_sqio_ReadBlock() argument
527 return sqfp->read_block(sqfp, sqBlock, max_residues, max_sequences, long_target); in esl_sqio_ReadBlock()
|
| /dports/biology/hmmer/hmmer-3.3/easel/ |
| H A D | esl_sqio.h | 61 …int (*read_block) (struct esl_sqio_s *sqfp, ESL_SQ_BLOCK *sqBlock, int max_residues, int ma…
135 extern int esl_sqio_ReadBlock (ESL_SQFILE *sqfp, ESL_SQ_BLOCK *sqBlock, int max_residues, int m…
|
| H A D | esl_sqio_ncbi.c | 1189 if (max_residues < 0) in sqncbi_ReadBlock()
1190 max_residues = MAX_RESIDUE_COUNT; in sqncbi_ReadBlock()
1199 status = sqncbi_ReadWindow(sqfp, sqBlock->list->C, max_residues, sqBlock->list); in sqncbi_ReadBlock()
1205 if (sqBlock->list->n >= max_residues) in sqncbi_ReadBlock()
1213 status = sqncbi_ReadWindow(sqfp, 0, max_residues, tmpsq); // burn off the EOD in sqncbi_ReadBlock()
1231 status = sqncbi_ReadWindow(sqfp, 0, max_residues, tmpsq); in sqncbi_ReadBlock()
1251 for ( ; i < sqBlock->listSize && size < max_residues; ++i) in sqncbi_ReadBlock()
1258 int request_size = ESL_MAX(max_residues-size, max_residues * .05); in sqncbi_ReadBlock()
1269 if (size >= max_residues) in sqncbi_ReadBlock()
1277 status = sqncbi_ReadWindow(sqfp, 0, max_residues, tmpsq); // burn off the EOD in sqncbi_ReadBlock()
[all …]
|
| H A D | esl_sqio_ascii.c | 48 static int sqascii_ReadBlock (ESL_SQFILE *sqfp, ESL_SQ_BLOCK *sqBlock, int max_residues, int…
1439 sqascii_ReadBlock(ESL_SQFILE *sqfp, ESL_SQ_BLOCK *sqBlock, int max_residues, int max_sequences, int… in sqascii_ReadBlock() argument
1467 if (max_residues < 1) in sqascii_ReadBlock()
1468 max_residues = MAX_RESIDUE_COUNT; in sqascii_ReadBlock()
1476 status = sqascii_ReadWindow(sqfp, sqBlock->list->C, max_residues, sqBlock->list); in sqascii_ReadBlock()
1482 if (size == max_residues) in sqascii_ReadBlock()
1501 status = sqascii_ReadWindow(sqfp, 0, max_residues, tmpsq); in sqascii_ReadBlock()
1520 for ( ; i < max_sequences && size < max_residues; ++i) { in sqascii_ReadBlock()
1526 int request_size = ESL_MAX(max_residues-size, max_residues * .05); in sqascii_ReadBlock()
1540 if (size >= max_residues) { in sqascii_ReadBlock()
[all …]
|
| H A D | esl_sqio.c | 525 esl_sqio_ReadBlock(ESL_SQFILE *sqfp, ESL_SQ_BLOCK *sqBlock, int max_residues, int max_sequences, in… in esl_sqio_ReadBlock() argument
527 return sqfp->read_block(sqfp, sqBlock, max_residues, max_sequences, long_target); in esl_sqio_ReadBlock()
|