/dports/biology/bcftools/bcftools-1.14/ |
H A D | vcfquery.c | 107 int max_unpack = convert_max_unpack(args->convert); in init_data() local 111 max_unpack |= filter_max_unpack(args->filter); in init_data() 113 args->files->max_unpack = max_unpack; in init_data() 139 bcf_unpack(line, args->files->max_unpack); in query_vcf()
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H A D | convert.c | 98 int max_unpack; member 1281 convert->max_unpack |= filter_max_unpack(flt); in register_tag() 1296 case T_END: fmt->handler = &process_end; convert->max_unpack |= BCF_UN_INFO; break; in register_tag() 1297 case T_END0: fmt->handler = &process_end0; convert->max_unpack |= BCF_UN_INFO; break; in register_tag() 1303 case T_INFO: fmt->handler = &process_info; convert->max_unpack |= BCF_UN_INFO; break; in register_tag() 1310 case T_GT: fmt->handler = &process_gt; convert->max_unpack |= BCF_UN_FMT; break; in register_tag() 1311 case T_TGT: fmt->handler = &process_tgt; convert->max_unpack |= BCF_UN_FMT; break; in register_tag() 1316 case T_LINE: fmt->handler = &process_line; convert->max_unpack |= BCF_UN_FMT; break; in register_tag() 1497 convert->max_unpack = BCF_UN_STR; in convert_init() 1616 bcf_unpack(line, convert->max_unpack); in convert_line() [all …]
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H A D | filter.c | 102 int max_unpack, mtmpi, mtmpf, nsamples; member 2657 filter->max_unpack |= BCF_UN_FLT; in filters_init1() 2711 filter->max_unpack |= BCF_UN_FMT; in filters_init1() 2718 filter->max_unpack |= BCF_UN_FMT; in filters_init1() 2813 filter->max_unpack |= BCF_UN_INFO; in filters_init1() 2829 filter->max_unpack |= BCF_UN_FMT; in filters_init1() 2837 filter->max_unpack |= BCF_UN_FMT; in filters_init1() 2869 filter->max_unpack |= BCF_UN_STR; in filters_init1() 3050 filter->max_unpack |= BCF_UN_STR; in filter_init() 3444 bcf_unpack(line, filter->max_unpack); in filter_test() [all …]
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/dports/biology/bio-mocha/bcftools-1.14/ |
H A D | vcfquery.c | 107 int max_unpack = convert_max_unpack(args->convert); in init_data() local 111 max_unpack |= filter_max_unpack(args->filter); in init_data() 113 args->files->max_unpack = max_unpack; in init_data() 139 bcf_unpack(line, args->files->max_unpack); in query_vcf()
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H A D | convert.c | 98 int max_unpack; member 1281 convert->max_unpack |= filter_max_unpack(flt); in register_tag() 1296 case T_END: fmt->handler = &process_end; convert->max_unpack |= BCF_UN_INFO; break; in register_tag() 1297 case T_END0: fmt->handler = &process_end0; convert->max_unpack |= BCF_UN_INFO; break; in register_tag() 1303 case T_INFO: fmt->handler = &process_info; convert->max_unpack |= BCF_UN_INFO; break; in register_tag() 1310 case T_GT: fmt->handler = &process_gt; convert->max_unpack |= BCF_UN_FMT; break; in register_tag() 1311 case T_TGT: fmt->handler = &process_tgt; convert->max_unpack |= BCF_UN_FMT; break; in register_tag() 1316 case T_LINE: fmt->handler = &process_line; convert->max_unpack |= BCF_UN_FMT; break; in register_tag() 1497 convert->max_unpack = BCF_UN_STR; in convert_init() 1616 bcf_unpack(line, convert->max_unpack); in convert_line() [all …]
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H A D | filter.c | 102 int max_unpack, mtmpi, mtmpf, nsamples; member 2657 filter->max_unpack |= BCF_UN_FLT; in filters_init1() 2711 filter->max_unpack |= BCF_UN_FMT; in filters_init1() 2718 filter->max_unpack |= BCF_UN_FMT; in filters_init1() 2813 filter->max_unpack |= BCF_UN_INFO; in filters_init1() 2829 filter->max_unpack |= BCF_UN_FMT; in filters_init1() 2837 filter->max_unpack |= BCF_UN_FMT; in filters_init1() 2869 filter->max_unpack |= BCF_UN_STR; in filters_init1() 3050 filter->max_unpack |= BCF_UN_STR; in filter_init() 3444 bcf_unpack(line, filter->max_unpack); in filter_test() [all …]
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/dports/biology/py-pysam/pysam-0.18.0/bcftools/ |
H A D | vcfquery.c | 107 int max_unpack = convert_max_unpack(args->convert); in init_data() local 111 max_unpack |= filter_max_unpack(args->filter); in init_data() 113 args->files->max_unpack = max_unpack; in init_data() 139 bcf_unpack(line, args->files->max_unpack); in query_vcf()
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H A D | vcfquery.c.pysam.c | 109 int max_unpack = convert_max_unpack(args->convert); in init_data() local 113 max_unpack |= filter_max_unpack(args->filter); in init_data() 115 args->files->max_unpack = max_unpack; in init_data() 141 bcf_unpack(line, args->files->max_unpack); in query_vcf()
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H A D | convert.c | 98 int max_unpack; member 1281 convert->max_unpack |= filter_max_unpack(flt); in register_tag() 1296 case T_END: fmt->handler = &process_end; convert->max_unpack |= BCF_UN_INFO; break; in register_tag() 1297 case T_END0: fmt->handler = &process_end0; convert->max_unpack |= BCF_UN_INFO; break; in register_tag() 1303 case T_INFO: fmt->handler = &process_info; convert->max_unpack |= BCF_UN_INFO; break; in register_tag() 1310 case T_GT: fmt->handler = &process_gt; convert->max_unpack |= BCF_UN_FMT; break; in register_tag() 1311 case T_TGT: fmt->handler = &process_tgt; convert->max_unpack |= BCF_UN_FMT; break; in register_tag() 1316 case T_LINE: fmt->handler = &process_line; convert->max_unpack |= BCF_UN_FMT; break; in register_tag() 1497 convert->max_unpack = BCF_UN_STR; in convert_init() 1616 bcf_unpack(line, convert->max_unpack); in convert_line() [all …]
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H A D | convert.c.pysam.c | 100 int max_unpack; member 1283 convert->max_unpack |= filter_max_unpack(flt); in register_tag() 1298 case T_END: fmt->handler = &process_end; convert->max_unpack |= BCF_UN_INFO; break; in register_tag() 1299 case T_END0: fmt->handler = &process_end0; convert->max_unpack |= BCF_UN_INFO; break; in register_tag() 1305 case T_INFO: fmt->handler = &process_info; convert->max_unpack |= BCF_UN_INFO; break; in register_tag() 1312 case T_GT: fmt->handler = &process_gt; convert->max_unpack |= BCF_UN_FMT; break; in register_tag() 1313 case T_TGT: fmt->handler = &process_tgt; convert->max_unpack |= BCF_UN_FMT; break; in register_tag() 1318 case T_LINE: fmt->handler = &process_line; convert->max_unpack |= BCF_UN_FMT; break; in register_tag() 1499 convert->max_unpack = BCF_UN_STR; in convert_init() 1618 bcf_unpack(line, convert->max_unpack); in convert_line() [all …]
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H A D | filter.c | 102 int max_unpack, mtmpi, mtmpf, nsamples; member 2657 filter->max_unpack |= BCF_UN_FLT; in filters_init1() 2711 filter->max_unpack |= BCF_UN_FMT; in filters_init1() 2718 filter->max_unpack |= BCF_UN_FMT; in filters_init1() 2813 filter->max_unpack |= BCF_UN_INFO; in filters_init1() 2829 filter->max_unpack |= BCF_UN_FMT; in filters_init1() 2837 filter->max_unpack |= BCF_UN_FMT; in filters_init1() 2869 filter->max_unpack |= BCF_UN_STR; in filters_init1() 3050 filter->max_unpack |= BCF_UN_STR; in filter_init() 3444 bcf_unpack(line, filter->max_unpack); in filter_test() [all …]
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H A D | filter.c.pysam.c | 104 int max_unpack, mtmpi, mtmpf, nsamples; member 2659 filter->max_unpack |= BCF_UN_FLT; in filters_init1() 2713 filter->max_unpack |= BCF_UN_FMT; in filters_init1() 2720 filter->max_unpack |= BCF_UN_FMT; in filters_init1() 2815 filter->max_unpack |= BCF_UN_INFO; in filters_init1() 2831 filter->max_unpack |= BCF_UN_FMT; in filters_init1() 2839 filter->max_unpack |= BCF_UN_FMT; in filters_init1() 2871 filter->max_unpack |= BCF_UN_STR; in filters_init1() 3052 filter->max_unpack |= BCF_UN_STR; in filter_init() 3446 bcf_unpack(line, filter->max_unpack); in filter_test() [all …]
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/dports/science/py-dlib/dlib-19.22/dlib/global_optimization/ |
H A D | find_max_global.h | 51 template <size_t max_unpack> 55 …> decltype(_cwv(std::forward<T>(f),a,typename make_compile_time_integer_range<max_unpack>::type())) 57 … return _cwv(std::forward<T>(f),a,typename make_compile_time_integer_range<max_unpack>::type()); 61 …const matrix<double,0,1>& a) -> decltype(call_function_and_expand_args<max_unpack-1>::template go(… 63 return call_function_and_expand_args<max_unpack-1>::go(std::forward<T>(f),a); 77 template <size_t max_unpack>
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/dports/science/dlib-cpp/dlib-19.22/dlib/global_optimization/ |
H A D | find_max_global.h | 51 template <size_t max_unpack> 55 …> decltype(_cwv(std::forward<T>(f),a,typename make_compile_time_integer_range<max_unpack>::type())) 57 … return _cwv(std::forward<T>(f),a,typename make_compile_time_integer_range<max_unpack>::type()); 61 …const matrix<double,0,1>& a) -> decltype(call_function_and_expand_args<max_unpack-1>::template go(… 63 return call_function_and_expand_args<max_unpack-1>::go(std::forward<T>(f),a); 77 template <size_t max_unpack>
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/dports/biology/bcftools/bcftools-1.14/plugins/ |
H A D | split-vep.c | 706 int max_unpack = args->convert ? convert_max_unpack(args->convert) : 0; in init_data() local 708 max_unpack |= filter_max_unpack(args->filter); in init_data() 709 …if ( !args->format_str ) max_unpack |= BCF_UN_FMT; // don't drop FMT fields on VCF input when… in init_data() 710 args->sr->max_unpack = max_unpack; in init_data() 711 if ( args->convert && (max_unpack & BCF_UN_FMT) ) in init_data()
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/dports/biology/bio-mocha/bcftools-1.14/plugins/ |
H A D | split-vep.c | 706 int max_unpack = args->convert ? convert_max_unpack(args->convert) : 0; in init_data() local 708 max_unpack |= filter_max_unpack(args->filter); in init_data() 709 …if ( !args->format_str ) max_unpack |= BCF_UN_FMT; // don't drop FMT fields on VCF input when… in init_data() 710 args->sr->max_unpack = max_unpack; in init_data() 711 if ( args->convert && (max_unpack & BCF_UN_FMT) ) in init_data()
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/dports/biology/vt/vt-0.57721/lib/htslib/htslib/ |
H A D | synced_bcf_reader.h | 165 …int max_unpack; // When reading VCFs and knowing some fields will not be needed, boost perform… member
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/dports/biology/bedtools/bedtools2-2.30.0/src/utils/htslib/htslib/ |
H A D | synced_bcf_reader.h | 165 …int max_unpack; // When reading VCFs and knowing some fields will not be needed, boost perform… member
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/dports/biology/stacks/stacks-2.4/htslib/htslib/ |
H A D | synced_bcf_reader.h | 165 …int max_unpack; // When reading VCFs and knowing some fields will not be needed, boost perform… member
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/dports/biology/kallisto/kallisto-0.46.1/ext/htslib/htslib/ |
H A D | synced_bcf_reader.h | 165 …int max_unpack; // When reading VCFs and knowing some fields will not be needed, boost perform… member
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/dports/biology/py-pysam/pysam-0.18.0/htslib/htslib/ |
H A D | synced_bcf_reader.h | 172 …int max_unpack; // When reading VCFs and knowing some fields will not be needed, boost perform… member
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/dports/biology/freebayes/freebayes-1.3.5/contrib/htslib/htslib/ |
H A D | synced_bcf_reader.h | 169 …int max_unpack; // When reading VCFs and knowing some fields will not be needed, boost perform… member
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/dports/biology/htslib/htslib-1.14/htslib/ |
H A D | synced_bcf_reader.h | 172 …int max_unpack; // When reading VCFs and knowing some fields will not be needed, boost perform… member
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/dports/biology/vt/vt-0.57721/lib/htslib/ |
H A D | synced_bcf_reader.c | 502 reader->buffer[reader->mbuffer-i]->max_unpack = files->max_unpack; in _reader_fill_buffer()
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/dports/biology/bedtools/bedtools2-2.30.0/src/utils/htslib/ |
H A D | synced_bcf_reader.c | 502 reader->buffer[reader->mbuffer-i]->max_unpack = files->max_unpack; in _reader_fill_buffer()
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