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Searched refs:max_unpack (Results 1 – 25 of 55) sorted by relevance

123

/dports/biology/bcftools/bcftools-1.14/
H A Dvcfquery.c107 int max_unpack = convert_max_unpack(args->convert); in init_data() local
111 max_unpack |= filter_max_unpack(args->filter); in init_data()
113 args->files->max_unpack = max_unpack; in init_data()
139 bcf_unpack(line, args->files->max_unpack); in query_vcf()
H A Dconvert.c98 int max_unpack; member
1281 convert->max_unpack |= filter_max_unpack(flt); in register_tag()
1296 case T_END: fmt->handler = &process_end; convert->max_unpack |= BCF_UN_INFO; break; in register_tag()
1297 case T_END0: fmt->handler = &process_end0; convert->max_unpack |= BCF_UN_INFO; break; in register_tag()
1303 case T_INFO: fmt->handler = &process_info; convert->max_unpack |= BCF_UN_INFO; break; in register_tag()
1310 case T_GT: fmt->handler = &process_gt; convert->max_unpack |= BCF_UN_FMT; break; in register_tag()
1311 case T_TGT: fmt->handler = &process_tgt; convert->max_unpack |= BCF_UN_FMT; break; in register_tag()
1316 case T_LINE: fmt->handler = &process_line; convert->max_unpack |= BCF_UN_FMT; break; in register_tag()
1497 convert->max_unpack = BCF_UN_STR; in convert_init()
1616 bcf_unpack(line, convert->max_unpack); in convert_line()
[all …]
H A Dfilter.c102 int max_unpack, mtmpi, mtmpf, nsamples; member
2657 filter->max_unpack |= BCF_UN_FLT; in filters_init1()
2711 filter->max_unpack |= BCF_UN_FMT; in filters_init1()
2718 filter->max_unpack |= BCF_UN_FMT; in filters_init1()
2813 filter->max_unpack |= BCF_UN_INFO; in filters_init1()
2829 filter->max_unpack |= BCF_UN_FMT; in filters_init1()
2837 filter->max_unpack |= BCF_UN_FMT; in filters_init1()
2869 filter->max_unpack |= BCF_UN_STR; in filters_init1()
3050 filter->max_unpack |= BCF_UN_STR; in filter_init()
3444 bcf_unpack(line, filter->max_unpack); in filter_test()
[all …]
/dports/biology/bio-mocha/bcftools-1.14/
H A Dvcfquery.c107 int max_unpack = convert_max_unpack(args->convert); in init_data() local
111 max_unpack |= filter_max_unpack(args->filter); in init_data()
113 args->files->max_unpack = max_unpack; in init_data()
139 bcf_unpack(line, args->files->max_unpack); in query_vcf()
H A Dconvert.c98 int max_unpack; member
1281 convert->max_unpack |= filter_max_unpack(flt); in register_tag()
1296 case T_END: fmt->handler = &process_end; convert->max_unpack |= BCF_UN_INFO; break; in register_tag()
1297 case T_END0: fmt->handler = &process_end0; convert->max_unpack |= BCF_UN_INFO; break; in register_tag()
1303 case T_INFO: fmt->handler = &process_info; convert->max_unpack |= BCF_UN_INFO; break; in register_tag()
1310 case T_GT: fmt->handler = &process_gt; convert->max_unpack |= BCF_UN_FMT; break; in register_tag()
1311 case T_TGT: fmt->handler = &process_tgt; convert->max_unpack |= BCF_UN_FMT; break; in register_tag()
1316 case T_LINE: fmt->handler = &process_line; convert->max_unpack |= BCF_UN_FMT; break; in register_tag()
1497 convert->max_unpack = BCF_UN_STR; in convert_init()
1616 bcf_unpack(line, convert->max_unpack); in convert_line()
[all …]
H A Dfilter.c102 int max_unpack, mtmpi, mtmpf, nsamples; member
2657 filter->max_unpack |= BCF_UN_FLT; in filters_init1()
2711 filter->max_unpack |= BCF_UN_FMT; in filters_init1()
2718 filter->max_unpack |= BCF_UN_FMT; in filters_init1()
2813 filter->max_unpack |= BCF_UN_INFO; in filters_init1()
2829 filter->max_unpack |= BCF_UN_FMT; in filters_init1()
2837 filter->max_unpack |= BCF_UN_FMT; in filters_init1()
2869 filter->max_unpack |= BCF_UN_STR; in filters_init1()
3050 filter->max_unpack |= BCF_UN_STR; in filter_init()
3444 bcf_unpack(line, filter->max_unpack); in filter_test()
[all …]
/dports/biology/py-pysam/pysam-0.18.0/bcftools/
H A Dvcfquery.c107 int max_unpack = convert_max_unpack(args->convert); in init_data() local
111 max_unpack |= filter_max_unpack(args->filter); in init_data()
113 args->files->max_unpack = max_unpack; in init_data()
139 bcf_unpack(line, args->files->max_unpack); in query_vcf()
H A Dvcfquery.c.pysam.c109 int max_unpack = convert_max_unpack(args->convert); in init_data() local
113 max_unpack |= filter_max_unpack(args->filter); in init_data()
115 args->files->max_unpack = max_unpack; in init_data()
141 bcf_unpack(line, args->files->max_unpack); in query_vcf()
H A Dconvert.c98 int max_unpack; member
1281 convert->max_unpack |= filter_max_unpack(flt); in register_tag()
1296 case T_END: fmt->handler = &process_end; convert->max_unpack |= BCF_UN_INFO; break; in register_tag()
1297 case T_END0: fmt->handler = &process_end0; convert->max_unpack |= BCF_UN_INFO; break; in register_tag()
1303 case T_INFO: fmt->handler = &process_info; convert->max_unpack |= BCF_UN_INFO; break; in register_tag()
1310 case T_GT: fmt->handler = &process_gt; convert->max_unpack |= BCF_UN_FMT; break; in register_tag()
1311 case T_TGT: fmt->handler = &process_tgt; convert->max_unpack |= BCF_UN_FMT; break; in register_tag()
1316 case T_LINE: fmt->handler = &process_line; convert->max_unpack |= BCF_UN_FMT; break; in register_tag()
1497 convert->max_unpack = BCF_UN_STR; in convert_init()
1616 bcf_unpack(line, convert->max_unpack); in convert_line()
[all …]
H A Dconvert.c.pysam.c100 int max_unpack; member
1283 convert->max_unpack |= filter_max_unpack(flt); in register_tag()
1298 case T_END: fmt->handler = &process_end; convert->max_unpack |= BCF_UN_INFO; break; in register_tag()
1299 case T_END0: fmt->handler = &process_end0; convert->max_unpack |= BCF_UN_INFO; break; in register_tag()
1305 case T_INFO: fmt->handler = &process_info; convert->max_unpack |= BCF_UN_INFO; break; in register_tag()
1312 case T_GT: fmt->handler = &process_gt; convert->max_unpack |= BCF_UN_FMT; break; in register_tag()
1313 case T_TGT: fmt->handler = &process_tgt; convert->max_unpack |= BCF_UN_FMT; break; in register_tag()
1318 case T_LINE: fmt->handler = &process_line; convert->max_unpack |= BCF_UN_FMT; break; in register_tag()
1499 convert->max_unpack = BCF_UN_STR; in convert_init()
1618 bcf_unpack(line, convert->max_unpack); in convert_line()
[all …]
H A Dfilter.c102 int max_unpack, mtmpi, mtmpf, nsamples; member
2657 filter->max_unpack |= BCF_UN_FLT; in filters_init1()
2711 filter->max_unpack |= BCF_UN_FMT; in filters_init1()
2718 filter->max_unpack |= BCF_UN_FMT; in filters_init1()
2813 filter->max_unpack |= BCF_UN_INFO; in filters_init1()
2829 filter->max_unpack |= BCF_UN_FMT; in filters_init1()
2837 filter->max_unpack |= BCF_UN_FMT; in filters_init1()
2869 filter->max_unpack |= BCF_UN_STR; in filters_init1()
3050 filter->max_unpack |= BCF_UN_STR; in filter_init()
3444 bcf_unpack(line, filter->max_unpack); in filter_test()
[all …]
H A Dfilter.c.pysam.c104 int max_unpack, mtmpi, mtmpf, nsamples; member
2659 filter->max_unpack |= BCF_UN_FLT; in filters_init1()
2713 filter->max_unpack |= BCF_UN_FMT; in filters_init1()
2720 filter->max_unpack |= BCF_UN_FMT; in filters_init1()
2815 filter->max_unpack |= BCF_UN_INFO; in filters_init1()
2831 filter->max_unpack |= BCF_UN_FMT; in filters_init1()
2839 filter->max_unpack |= BCF_UN_FMT; in filters_init1()
2871 filter->max_unpack |= BCF_UN_STR; in filters_init1()
3052 filter->max_unpack |= BCF_UN_STR; in filter_init()
3446 bcf_unpack(line, filter->max_unpack); in filter_test()
[all …]
/dports/science/py-dlib/dlib-19.22/dlib/global_optimization/
H A Dfind_max_global.h51 template <size_t max_unpack>
55 …> decltype(_cwv(std::forward<T>(f),a,typename make_compile_time_integer_range<max_unpack>::type()))
57 … return _cwv(std::forward<T>(f),a,typename make_compile_time_integer_range<max_unpack>::type());
61 …const matrix<double,0,1>& a) -> decltype(call_function_and_expand_args<max_unpack-1>::template go(…
63 return call_function_and_expand_args<max_unpack-1>::go(std::forward<T>(f),a);
77 template <size_t max_unpack>
/dports/science/dlib-cpp/dlib-19.22/dlib/global_optimization/
H A Dfind_max_global.h51 template <size_t max_unpack>
55 …> decltype(_cwv(std::forward<T>(f),a,typename make_compile_time_integer_range<max_unpack>::type()))
57 … return _cwv(std::forward<T>(f),a,typename make_compile_time_integer_range<max_unpack>::type());
61 …const matrix<double,0,1>& a) -> decltype(call_function_and_expand_args<max_unpack-1>::template go(…
63 return call_function_and_expand_args<max_unpack-1>::go(std::forward<T>(f),a);
77 template <size_t max_unpack>
/dports/biology/bcftools/bcftools-1.14/plugins/
H A Dsplit-vep.c706 int max_unpack = args->convert ? convert_max_unpack(args->convert) : 0; in init_data() local
708 max_unpack |= filter_max_unpack(args->filter); in init_data()
709 …if ( !args->format_str ) max_unpack |= BCF_UN_FMT; // don't drop FMT fields on VCF input when… in init_data()
710 args->sr->max_unpack = max_unpack; in init_data()
711 if ( args->convert && (max_unpack & BCF_UN_FMT) ) in init_data()
/dports/biology/bio-mocha/bcftools-1.14/plugins/
H A Dsplit-vep.c706 int max_unpack = args->convert ? convert_max_unpack(args->convert) : 0; in init_data() local
708 max_unpack |= filter_max_unpack(args->filter); in init_data()
709 …if ( !args->format_str ) max_unpack |= BCF_UN_FMT; // don't drop FMT fields on VCF input when… in init_data()
710 args->sr->max_unpack = max_unpack; in init_data()
711 if ( args->convert && (max_unpack & BCF_UN_FMT) ) in init_data()
/dports/biology/vt/vt-0.57721/lib/htslib/htslib/
H A Dsynced_bcf_reader.h165 …int max_unpack; // When reading VCFs and knowing some fields will not be needed, boost perform… member
/dports/biology/bedtools/bedtools2-2.30.0/src/utils/htslib/htslib/
H A Dsynced_bcf_reader.h165 …int max_unpack; // When reading VCFs and knowing some fields will not be needed, boost perform… member
/dports/biology/stacks/stacks-2.4/htslib/htslib/
H A Dsynced_bcf_reader.h165 …int max_unpack; // When reading VCFs and knowing some fields will not be needed, boost perform… member
/dports/biology/kallisto/kallisto-0.46.1/ext/htslib/htslib/
H A Dsynced_bcf_reader.h165 …int max_unpack; // When reading VCFs and knowing some fields will not be needed, boost perform… member
/dports/biology/py-pysam/pysam-0.18.0/htslib/htslib/
H A Dsynced_bcf_reader.h172 …int max_unpack; // When reading VCFs and knowing some fields will not be needed, boost perform… member
/dports/biology/freebayes/freebayes-1.3.5/contrib/htslib/htslib/
H A Dsynced_bcf_reader.h169 …int max_unpack; // When reading VCFs and knowing some fields will not be needed, boost perform… member
/dports/biology/htslib/htslib-1.14/htslib/
H A Dsynced_bcf_reader.h172 …int max_unpack; // When reading VCFs and knowing some fields will not be needed, boost perform… member
/dports/biology/vt/vt-0.57721/lib/htslib/
H A Dsynced_bcf_reader.c502 reader->buffer[reader->mbuffer-i]->max_unpack = files->max_unpack; in _reader_fill_buffer()
/dports/biology/bedtools/bedtools2-2.30.0/src/utils/htslib/
H A Dsynced_bcf_reader.c502 reader->buffer[reader->mbuffer-i]->max_unpack = files->max_unpack; in _reader_fill_buffer()

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