Searched refs:minBeginPos (Results 1 – 4 of 4) sorted by relevance
| /dports/biology/seqan1/seqan-1.3.1/apps/razers/ |
| H A D | razers_spliced.h | 1917 TGPos minBeginPos = beginPosition(infix(swiftFinderR, genomeInf)); in mapSplicedReads() local
1918 …if((int)minBeginPos - length(read)+2*options.minMatchLen - floor(options.errorRate*length(read)) >… in mapSplicedReads()
1919 …minBeginPos = minBeginPos - length(read)+2*options.minMatchLen - floor(options.errorRate*length(re… in mapSplicedReads()
1920 else minBeginPos = 0; in mapSplicedReads()
1922 infix(genome,minBeginPos,endPosition(infix(swiftFinderR, genomeInf))), in mapSplicedReads()
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| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/apps/razers/ |
| H A D | razers_spliced.h | 1919 TGPos minBeginPos = beginPosition(infix(swiftFinderR, genomeInf)); in mapSplicedReads() local
1920 …if((int)minBeginPos - length(read)+2*options.minMatchLen - floor(options.errorRate*length(read)) >… in mapSplicedReads()
1921 …minBeginPos = minBeginPos - length(read)+2*options.minMatchLen - floor(options.errorRate*length(re… in mapSplicedReads()
1922 else minBeginPos = 0; in mapSplicedReads()
1924 infix(genome,minBeginPos,endPosition(infix(swiftFinderR, genomeInf))), in mapSplicedReads()
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| /dports/biology/seqan1/seqan-1.3.1/apps/splazers/ |
| H A D | razers_spliced.h | 1980 TGPos minBeginPos = beginPosition(infix(swiftFinderR, genomeInf)); in mapSplicedReads() local
1981 …if((int)minBeginPos - length(read)+2*options.minMatchLen - floor(options.errorRate*length(read)) >… in mapSplicedReads()
1982 …minBeginPos = minBeginPos - length(read)+2*options.minMatchLen - static_cast<int>(floor(options.er… in mapSplicedReads()
1983 else minBeginPos = 0; in mapSplicedReads()
1985 infix(genome,minBeginPos,endPosition(infix(swiftFinderR, genomeInf))), in mapSplicedReads()
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| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/apps/splazers/ |
| H A D | razers_spliced.h | 2538 TGPos minBeginPos = beginPosition(infix(swiftFinderR, genomeInf)); in mapSplicedReads() local
2539 if((int)minBeginPos - extensionOffset > 0) in mapSplicedReads()
2540 minBeginPos = minBeginPos - extensionOffset; in mapSplicedReads()
2541 else minBeginPos = 0; in mapSplicedReads()
2544 infix(genome,minBeginPos,endPosition(infix(swiftFinderR, genomeInf))), in mapSplicedReads()
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