Searched refs:minMismatchToChimera (Results 1 – 2 of 2) sorted by relevance
| /dports/biology/mothur/mothur-1.46.1/source/commands/ |
| H A D | chimeraperseuscommand.cpp | 270 int minMismatchToChimera, leftParentBi, rightParentBi, breakPointBi; in driver() local
277 …minMismatchToChimera = myPerseus.getChimera(params->sequences, leftDiffs, rightDiffs, leftParentBi… in driver()
283 if(minMismatchToChimera >= 3 && comparisons >= 3){ in driver()
295 if(minMismatchToChimera - minMismatchToTrimera >= 3){ in driver()
316 …chimeraFile << minMismatchToChimera << '\t' << leftParentBi << '\t' << rightParentBi << '\t' << pa… in driver()
318 …chimeraFile << minMismatchToChimera << '\t' << minMismatchToTrimera << '\t' << breakPointBi << '\t… in driver()
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| /dports/biology/mothur/mothur-1.46.1/source/ |
| H A D | refchimeratest.cpp | 82 …int minMismatchToChimera = getChimera(left, right, leftParentBi, rightParentBi, breakPointBi, sing… in analyzeAlignedQuery() local
87 …if(bestSequenceMismatch - minMismatchToChimera >= 3){// || (minMismatchToChimera == 0 && bestSeque… in analyzeAlignedQuery()
103 output += toString(minMismatchToChimera) + "\t"; in analyzeAlignedQuery()
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