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Searched refs:minPassingScore3 (Results 1 – 5 of 5) sorted by relevance

/dports/biology/bbmap/bbmap/current/icecream/
H A DIceCreamAlignerJava.java27 final int minPassingScore3=minPassingScore-query.length*pointsMatch; in alignForward() local
47 final int minViableScore=minPassingScore3-remainingPoints; in alignForward()
127 final int minPassingScore3=minPassingScore-query.length; in alignForwardShort() local
H A DIceCreamAlignerJNI.java141 final int minPassingScore3=minPassingScore-qlen*pointsMatch; in alignForwardPseudo() local
156 final int minViableScore=minPassingScore3-remainingPoints; in alignForwardPseudo()
/dports/biology/bbmap/bbmap/current/aligner/
H A DFlatAligner.java32 final int minPassingScore3=minPassingScore-query.length*pointsMatch; in alignForward() local
52 final int minViableScore=minPassingScore3-remainingPoints; in alignForward()
H A DFlatAligner2.java32 final int minPassingScore3=minPassingScore-query.length*pointsMatch; in alignForward() local
52 final int minViableScore=minPassingScore3-remainingPoints; in alignForward()
/dports/biology/bbmap/bbmap/jni/
H A DIceCreamAlignerJNI.c29 const int minPassingScore3=minPassingScore-qlen*pointsMatch; in alignForwardJNI() local
44 const int minViableScore=minPassingScore3-remainingPoints; in alignForwardJNI()
114 const jshort minPassingScore3=minPassingScore-qlen*pointsMatch; in alignForward16JNI() local
129 const jshort minViableScore=minPassingScore3-remainingPoints; in alignForward16JNI()