Searched refs:min_diag_length (Results 1 – 3 of 3) sorted by relevance
7110 min_diag_length = ewp_params->min_diag_length; in BlastWordFinder_contig()7164 diag_tmp = s_off + min_diag_length; in BlastWordFinder_contig()7227 diag_tmp = s_off + min_diag_length; in BlastWordFinder_contig()7382 Int4 min_diag_length, min_diag_mask; in BlastWordFinder_mh_contig() local7420 min_diag_length = ewp_params->min_diag_length; in BlastWordFinder_mh_contig()7577 diag_tmp = s_off + min_diag_length; in BlastWordFinder_mh_contig()7671 diag_tmp = s_off + min_diag_length; in BlastWordFinder_mh_contig()7766 diag_tmp = s_off + min_diag_length; in BlastWordFinder_mh_contig()7858 diag -= search->ewp_params->min_diag_length; in BlastWordExtend()8864 min_diag_length = ewp_params->min_diag_length; in BlastNtWordFinder_mh()[all …]
5589 Int4 min_diag_length, bits_to_shift; in BLAST_ExtendWordParamsNew() local5595 min_diag_length = 1; in BLAST_ExtendWordParamsNew()5598 while (min_diag_length < (qlen+window_size)) in BLAST_ExtendWordParamsNew()5600 min_diag_length = min_diag_length << 1; in BLAST_ExtendWordParamsNew()5606 ewp_params->min_diag_length = min_diag_length; in BLAST_ExtendWordParamsNew()5607 ewp_params->min_diag_mask = min_diag_length-1; in BLAST_ExtendWordParamsNew()5667 ewp->_buffer = (Int4Ptr) MemNew(ewp_params->min_diag_length*sizeof(CfjModStruct)); in BLAST_ExtendWordNew()5677 for(i=0;i<ewp_params->min_diag_length;i++){ in BLAST_ExtendWordNew()5707 Int4 i, min_diag_length; in BlastExtendWordExit() local5718 min_diag_length = ewp_params->min_diag_length; in BlastExtendWordExit()[all …]
1467 Int4 min_diag_length, /* Min. length of diagonal, actuall member