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Searched refs:min_mean_depth (Results 1 – 4 of 4) sorted by relevance

/dports/biology/vcftools/vcftools-0.1.16/src/cpp/
H A Dparameters.cpp76 min_mean_depth = -1.0; in parameters()
295 …else if (in_str == "--min-meanDP") { min_mean_depth = atof(get_arg(i+1).c_str()); i++; } // Site… in read_parameters()
451 …if (min_mean_depth != defaults.min_mean_depth) LOG.printLOG("\t--min-meanDP " + output_log::dbl2st… in print_params()
715 …if (max_mean_depth < min_mean_depth) error("Max Mean Depth must be greater the Min Mean Depth.", 7… in check_parameters()
H A Dentry_filters.cpp46 filter_sites_by_mean_depth(params.min_mean_depth, params.max_mean_depth); in apply_filters()
220 void entry::filter_sites_by_mean_depth(double min_mean_depth, double max_mean_depth) in filter_sites_by_mean_depth() argument
226 if ((min_mean_depth <= 0) && (max_mean_depth == numeric_limits<double>::max())) in filter_sites_by_mean_depth()
255 if ((mean_depth < min_mean_depth) || (mean_depth > max_mean_depth)) in filter_sites_by_mean_depth()
H A Dparameters.h103 double min_mean_depth; variable
H A Dentry.h49 void filter_sites_by_mean_depth(double min_mean_depth, double max_mean_depth);