| /dports/misc/py-orange3-associate/orange3-associate-1.1.8/orangecontrib/associate/ |
| H A D | fpgrowth.py | 196 if count >= min_support:
221 def _fp_tree(db, min_support): argument
249 if support >= min_support}
326 def _freq_patterns_multi(Q, alpha, min_support): argument
340 def _fp_growth(tree, alpha, min_support): argument
352 def frequent_itemsets(X, min_support=.2): argument
423 if not (isinstance(min_support, int) and min_support > 0 or
424 isinstance(min_support, float) and 0 < min_support <= 1):
428 min_support *= (1 if isinstance(min_support, int) else
431 min_support = max(1, int(np.ceil(min_support)))
[all …]
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| H A D | _fpgrowth.pyx | 24 int min_support): argument
63 if count >= min_support:
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/algo/sequence/ |
| H A D | adapter_search.hpp | 108 size_t min_support; member
115 : min_support(100) in SParams()
129 && top_candidate_sup > min_support; in HaveInitialSupport()
|
| /dports/math/chuffed/chuffed-e04bedd/chuffed/primitives/ |
| H A D | element.cpp | 118 Tint min_support; member in IntElemBounds
130 y(_y), x(_x), a(_a), min_support(-1), max_support(-1), fixed_index(-1), in IntElemBounds()
147 if (i == min_support && a[i].getMin() > y.getMin()) no_min_support = true; in wakeup()
151 if (!x.indomain(min_support)) { no_min_support = true; pushInQueue(); } in wakeup()
190 min_support = best; in propagate()
|
| /dports/biology/stringtie/stringtie-2.1.1/samtools-0.1.18/ |
| H A D | bam_plcmd.c | 84 int openQ, extQ, tandemQ, min_support; // for indels member
275 bca->min_support = conf->min_support; in mpileup()
446 mplp.min_frac = 0.002; mplp.min_support = 1; in bam_mpileup()
480 case 'm': mplp.min_support = atoi(optarg); break; in bam_mpileup()
528 …(stderr, " -m INT minimum gapped reads for indel candidates [%d]\n", mplp.min_support); in bam_mpileup()
|
| /dports/biology/ugene/ugene-40.1/src/libs_3rdparty/samtools/src/samtools/ |
| H A D | bam2bcf.h | 14 int min_support; // for collecting indel candidates member
|
| H A D | bam_plcmd.c | 85 int openQ, extQ, tandemQ, min_support; // for indels member
301 bca->min_support = conf->min_support; in mpileup()
476 mplp.min_frac = 0.002; mplp.min_support = 1; in bam_mpileup()
583 …(stderr, " -m INT minimum gapped reads for indel candidates [%d]\n", mplp.min_support); in bam_mpileup()
|
| /dports/biology/py-pysam/pysam-0.18.0/samtools/ |
| H A D | bam2bcf.h | 64 uint32_t min_support, max_support; // for collecting indel candidates member
|
| H A D | bam_plcmd.c | 204 int openQ, extQ, tandemQ, min_support; // for indels member
705 bca->min_support = conf->min_support; in mpileup()
1263 mplp.min_frac = 0.002; mplp.min_support = 1; in bam_mpileup()
1428 case 'm': mplp.min_support = atoi(optarg); deprecated(c); break; in bam_mpileup()
|
| H A D | bam_plcmd.c.pysam.c | 206 int openQ, extQ, tandemQ, min_support; // for indels member
707 bca->min_support = conf->min_support; in mpileup()
1265 mplp.min_frac = 0.002; mplp.min_support = 1; in bam_mpileup()
1430 case 'm': mplp.min_support = atoi(optarg); deprecated(c); break; in bam_mpileup()
|
| /dports/biology/samtools/samtools-1.14/ |
| H A D | bam2bcf.h | 64 uint32_t min_support, max_support; // for collecting indel candidates member
|
| H A D | bam_plcmd.c | 204 int openQ, extQ, tandemQ, min_support; // for indels member
705 bca->min_support = conf->min_support; in mpileup()
1263 mplp.min_frac = 0.002; mplp.min_support = 1; in bam_mpileup()
1428 case 'm': mplp.min_support = atoi(optarg); deprecated(c); break; in bam_mpileup()
|
| /dports/biology/bcftools/bcftools-1.14/ |
| H A D | bam2bcf.h | 84 uint32_t min_support, max_support; // for collecting indel candidates member
|
| H A D | mpileup.c | 73 int openQ, extQ, tandemQ, min_support, indel_win_size; // for indels member
845 conf->bca->min_support = conf->min_support; in mpileup()
1159 …, --min-ireads INT Minimum number gapped reads for indel candidates [%d]\n", mplp->min_support); in print_usage()
1205 mplp.min_frac = 0.05; mplp.indel_bias = 1.0; mplp.min_support = 2; in main_mpileup()
1400 case 'm': mplp.min_support = atoi(optarg); break; in main_mpileup()
1432 mplp.min_support = 1; in main_mpileup()
|
| /dports/biology/bio-mocha/bcftools-1.14/ |
| H A D | bam2bcf.h | 84 uint32_t min_support, max_support; // for collecting indel candidates member
|
| H A D | mpileup.c | 73 int openQ, extQ, tandemQ, min_support, indel_win_size; // for indels member
845 conf->bca->min_support = conf->min_support; in mpileup()
1159 …, --min-ireads INT Minimum number gapped reads for indel candidates [%d]\n", mplp->min_support); in print_usage()
1205 mplp.min_frac = 0.05; mplp.indel_bias = 1.0; mplp.min_support = 2; in main_mpileup()
1400 case 'm': mplp.min_support = atoi(optarg); break; in main_mpileup()
1432 mplp.min_support = 1; in main_mpileup()
|
| /dports/biology/py-pysam/pysam-0.18.0/bcftools/ |
| H A D | bam2bcf.h | 84 uint32_t min_support, max_support; // for collecting indel candidates member
|
| H A D | mpileup.c | 73 int openQ, extQ, tandemQ, min_support, indel_win_size; // for indels member
845 conf->bca->min_support = conf->min_support; in mpileup()
1159 …, --min-ireads INT Minimum number gapped reads for indel candidates [%d]\n", mplp->min_support); in print_usage()
1205 mplp.min_frac = 0.05; mplp.indel_bias = 1.0; mplp.min_support = 2; in main_mpileup()
1400 case 'm': mplp.min_support = atoi(optarg); break; in main_mpileup()
1432 mplp.min_support = 1; in main_mpileup()
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| H A D | mpileup.c.pysam.c | 75 int openQ, extQ, tandemQ, min_support, indel_win_size; // for indels member
847 conf->bca->min_support = conf->min_support; in mpileup()
1161 …, --min-ireads INT Minimum number gapped reads for indel candidates [%d]\n", mplp->min_support); in print_usage()
1207 mplp.min_frac = 0.05; mplp.indel_bias = 1.0; mplp.min_support = 2; in main_mpileup()
1402 case 'm': mplp.min_support = atoi(optarg); break; in main_mpileup()
1434 mplp.min_support = 1; in main_mpileup()
|
| /dports/math/py-or-tools/or-tools-9.2/ortools/constraint_solver/ |
| H A D | table.cc | 472 const bool min_support = Supported(var_index, var_min - original_min); in Propagate() local
474 if (!min_support) { in Propagate()
947 const bool min_support = in Propagate() local
951 if (!min_support && !max_support) { in Propagate()
953 } else if (!min_support) { in Propagate()
|
| H A D | element.cc | 173 int min_support = emax; in UpdateSupports() local
186 min_support = index; in UpdateSupports()
198 min_support = index; in UpdateSupports()
206 s->SaveAndSetValue(&min_support_, min_support); in UpdateSupports()
1293 int min_support = -1; in Propagate() local
1308 solver()->SaveAndSetValue(&min_support_, min_support); in Propagate()
|
| /dports/devel/abseil/abseil-cpp-20211102.0/absl/types/internal/ |
| H A D | conformance_profile.h | 301 void ExpectModelOfImpl(ConformanceErrors* errors, Enum min_support,
304 const auto min_support_value = UnderlyingValue(min_support);
|
| /dports/graphics/R-cran-s2/s2/src/absl/types/internal/ |
| H A D | conformance_profile.h | 301 void ExpectModelOfImpl(ConformanceErrors* errors, Enum min_support,
304 const auto min_support_value = UnderlyingValue(min_support);
|
| /dports/www/firefox/firefox-99.0/third_party/libwebrtc/third_party/abseil-cpp/absl/types/internal/ |
| H A D | conformance_profile.h | 301 void ExpectModelOfImpl(ConformanceErrors* errors, Enum min_support,
304 const auto min_support_value = UnderlyingValue(min_support);
|
| /dports/www/chromium-legacy/chromium-88.0.4324.182/third_party/abseil-cpp/absl/types/internal/ |
| H A D | conformance_profile.h | 301 void ExpectModelOfImpl(ConformanceErrors* errors, Enum min_support,
304 const auto min_support_value = UnderlyingValue(min_support);
|