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/dports/biology/bbmap/bbmap/current/kmer/
H A DKmerNode1D.java115 if(value>=mincount){ in dumpKmersAsBytes()
119 if(left!=null){left.dumpKmersAsBytes(bsw, k, mincount, maxcount, remaining);} in dumpKmersAsBytes()
120 if(right!=null){right.dumpKmersAsBytes(bsw, k, mincount, maxcount, remaining);} in dumpKmersAsBytes()
127 if(value>=mincount){ in dumpKmersAsBytes_MT()
137 if(left!=null){left.dumpKmersAsBytes_MT(bsw, bb, k, mincount, maxcount, remaining);} in dumpKmersAsBytes_MT()
138 if(right!=null){right.dumpKmersAsBytes_MT(bsw, bb, k, mincount, maxcount, remaining);} in dumpKmersAsBytes_MT()
146 if(value>=mincount){sb.append(AbstractKmerTable.toText(pivot, value, k)).append('\n');} in dumpKmersAsText()
147 if(left!=null){left.dumpKmersAsText(sb, k, mincount, maxcount);} in dumpKmersAsText()
148 if(right!=null){right.dumpKmersAsText(sb, k, mincount, maxcount);} in dumpKmersAsText()
157 if(left!=null){left.dumpKmersAsText(bb, k, mincount, maxcount);} in dumpKmersAsText()
[all …]
H A DKmerNode2D.java244 …public final boolean dumpKmersAsBytes(ByteStreamWriter bsw, int k, int mincount, int maxcount, Ato…
248 if(left!=null){left.dumpKmersAsBytes(bsw, k, mincount, maxcount, remaining);}
249 if(right!=null){right.dumpKmersAsBytes(bsw, k, mincount, maxcount, remaining);}
264 if(left!=null){left.dumpKmersAsBytes_MT(bsw, bb, k, mincount, maxcount, remaining);}
265 if(right!=null){right.dumpKmersAsBytes_MT(bsw, bb, k, mincount, maxcount, remaining);}
270 protected final StringBuilder dumpKmersAsText(StringBuilder sb, int k, int mincount, int maxcount){
274 if(left!=null){left.dumpKmersAsText(sb, k, mincount, maxcount);}
275 if(right!=null){right.dumpKmersAsText(sb, k, mincount, maxcount);}
280 protected final ByteBuilder dumpKmersAsText(ByteBuilder bb, int k, int mincount, int maxcount){
284 if(left!=null){left.dumpKmersAsText(bb, k, mincount, maxcount);}
[all …]
H A DKmerLink.java217 …public final boolean dumpKmersAsBytes(ByteStreamWriter bsw, int k, int mincount, int maxcount, Ato… in dumpKmersAsBytes() argument
219 if(value>=mincount){ in dumpKmersAsBytes()
223 if(next!=null){next.dumpKmersAsBytes(bsw, k, mincount, maxcount, remaining);} in dumpKmersAsBytes()
228 …inal ByteStreamWriter bsw, final ByteBuilder bb, final int k, final int mincount, int maxcount, At… in dumpKmersAsBytes_MT() argument
230 if(value>=mincount){ in dumpKmersAsBytes_MT()
240 if(next!=null){next.dumpKmersAsBytes_MT(bsw, bb, k, mincount, maxcount, remaining);} in dumpKmersAsBytes_MT()
245 public final boolean dumpKmersAsText(TextStreamWriter tsw, int k, int mincount, int maxcount) { in dumpKmersAsText() argument
246 tsw.print(dumpKmersAsText(new StringBuilder(32), k, mincount, maxcount)); in dumpKmersAsText()
250 private final StringBuilder dumpKmersAsText(StringBuilder sb, int k, int mincount, int maxcount){ in dumpKmersAsText() argument
253 if(value>=mincount){sb.append(AbstractKmerTable.toText(pivot, value, k)).append('\n');} in dumpKmersAsText()
[all …]
H A DDumpThread.java19 …public static boolean dump(final int k, final int mincount, final int maxcount, final AbstractKmer… in dump() argument
24 list.add(new DumpThread(k, mincount, maxcount, lock, tables, bsw, remaining)); in dump()
44 mincount=mincount_; in DumpThread()
57 t.dumpKmersAsBytes_MT(bsw, bb, k, mincount, maxcount, remaining); in run()
66 final int mincount; field in DumpThread
/dports/biology/bbmap/bbmap/current/ukmer/
H A DKmerNodeU1D.java115 if(value>=mincount){ in dumpKmersAsBytes()
119 if(left!=null){left.dumpKmersAsBytes(bsw, k, mincount, maxcount, remaining);} in dumpKmersAsBytes()
120 if(right!=null){right.dumpKmersAsBytes(bsw, k, mincount, maxcount, remaining);} in dumpKmersAsBytes()
127 if(value>=mincount){ in dumpKmersAsBytes_MT()
137 if(left!=null){left.dumpKmersAsBytes_MT(bsw, bb, k, mincount, maxcount, remaining);} in dumpKmersAsBytes_MT()
138 if(right!=null){right.dumpKmersAsBytes_MT(bsw, bb, k, mincount, maxcount, remaining);} in dumpKmersAsBytes_MT()
146 if(value>=mincount){sb.append(AbstractKmerTableU.toText(pivot, value, k)).append('\n');} in dumpKmersAsText()
147 if(left!=null){left.dumpKmersAsText(sb, k, mincount, maxcount);} in dumpKmersAsText()
148 if(right!=null){right.dumpKmersAsText(sb, k, mincount, maxcount);} in dumpKmersAsText()
157 if(left!=null){left.dumpKmersAsText(bb, k, mincount, maxcount);} in dumpKmersAsText()
[all …]
H A DKmerNodeU2D.java190 …public final boolean dumpKmersAsBytes(ByteStreamWriter bsw, int k, int mincount, int maxcount, Ato… in dumpKmersAsBytes() argument
194 if(left!=null){left.dumpKmersAsBytes(bsw, k, mincount, maxcount, remaining);} in dumpKmersAsBytes()
195 if(right!=null){right.dumpKmersAsBytes(bsw, k, mincount, maxcount, remaining);} in dumpKmersAsBytes()
210 if(left!=null){left.dumpKmersAsBytes_MT(bsw, bb, k, mincount, maxcount, remaining);} in dumpKmersAsBytes_MT()
211 if(right!=null){right.dumpKmersAsBytes_MT(bsw, bb, k, mincount, maxcount, remaining);} in dumpKmersAsBytes_MT()
216 protected final StringBuilder dumpKmersAsText(StringBuilder sb, int k, int mincount, int maxcount){ in dumpKmersAsText() argument
220 if(left!=null){left.dumpKmersAsText(sb, k, mincount, maxcount);} in dumpKmersAsText()
221 if(right!=null){right.dumpKmersAsText(sb, k, mincount, maxcount);} in dumpKmersAsText()
226 protected final ByteBuilder dumpKmersAsText(ByteBuilder bb, int k, int mincount, int maxcount){ in dumpKmersAsText() argument
230 if(left!=null){left.dumpKmersAsText(bb, k, mincount, maxcount);} in dumpKmersAsText()
[all …]
H A DDumpThreadU.java20 …public static boolean dump(final int k, final int mincount, final int maxcount, final AbstractKmer… in dump() argument
25 list.add(new DumpThreadU(k, mincount, maxcount, lock, tables, bsw, remaining)); in dump()
45 mincount=mincount_; in DumpThreadU()
58 t.dumpKmersAsBytes_MT(bsw, bb, k, mincount, maxcount, remaining); in run()
67 final int mincount; field in DumpThreadU
/dports/devel/upp/upp/bazaar/PixRaster/lib/
H A Dflipdetect.c262 l_int32 mincount, in pixOrientDetect() argument
275 if (mincount == 0) in pixOrientDetect()
455 if (mincount == 0) in pixUpDownDetectGeneral()
527 if (nmax > mincount) in pixUpDownDetectGeneral()
590 if (mincount == 0) in pixOrientDetectDwa()
671 if (mincount == 0) in pixUpDownDetectGeneralDwa()
741 if (nmax > mincount) in pixUpDownDetectGeneralDwa()
820 if (mincount == 0) in pixMirrorDetect()
859 if (nmax > mincount) in pixMirrorDetect()
911 if (mincount == 0) in pixMirrorDetectDwa()
[all …]
/dports/graphics/leptonica/leptonica-1.76.0/src/
H A Dflipdetect.c373 l_int32 mincount, in pixOrientDetect() argument
384 if (mincount == 0) in pixOrientDetect()
576 if (mincount == 0) in pixUpDownDetectGeneral()
650 if (nmax > mincount) in pixUpDownDetectGeneral()
713 if (mincount == 0) in pixOrientDetectDwa()
798 if (mincount == 0) in pixUpDownDetectGeneralDwa()
870 if (nmax > mincount) in pixUpDownDetectGeneralDwa()
951 if (mincount == 0) in pixMirrorDetect()
989 if (nmax > mincount) in pixMirrorDetect()
1043 if (mincount == 0) in pixMirrorDetectDwa()
[all …]
/dports/www/joomla3/joomla3-3.9.24/modules/mod_tags_popular/tmpl/
H A Dcloud.php23 $mincount = null; variable
27 if ($mincount === null || $mincount > $item->count)
29 $mincount = $item->count; variable
36 $countdiff = $maxcount - $mincount;
42 $fontsize = $minsize + (($maxsize - $minsize) / $countdiff) * ($item->count - $mincount);
/dports/devel/argtable/argtable2-13/src/
H A Dargtable2.h71 int mincount; /* Minimum number of occurences of this option accepted */ member
160 int mincount,
172 int mincount,
187 int mincount,
202 int mincount,
217 int mincount,
237 int mincount,
253 int mincount,
271 int mincount,
H A Darg_lit.c55 int errorcode = (parent->count < parent->hdr.mincount) ? EMINCOUNT : 0; in checkfn()
94 int mincount, in arg_litn() argument
101 maxcount = (maxcount<mincount) ? mincount : maxcount; in arg_litn()
112 result->hdr.mincount = mincount; in arg_litn()
H A Darg_str.c69 int errorcode = (parent->count < parent->hdr.mincount) ? EMINCOUNT : 0; in checkfn()
119 int mincount, in arg_strn() argument
127 maxcount = (maxcount<mincount) ? mincount : maxcount; in arg_strn()
143 result->hdr.mincount = mincount; in arg_strn()
H A Darg_dbl.c79 int errorcode = (parent->count < parent->hdr.mincount) ? EMINCOUNT : 0; in checkfn()
134 int mincount, in arg_dbln() argument
142 maxcount = (maxcount<mincount) ? mincount : maxcount; in arg_dbln()
159 result->hdr.mincount = mincount; in arg_dbln()
H A Darg_date.c81 int errorcode = (parent->count < parent->hdr.mincount) ? EMINCOUNT : 0; in checkfn()
148 int mincount, in arg_daten() argument
156 maxcount = (maxcount<mincount) ? mincount : maxcount; in arg_daten()
176 result->hdr.mincount = mincount; in arg_daten()
H A Darg_file.c137 int errorcode = (parent->count < parent->hdr.mincount) ? EMINCOUNT : 0; in checkfn()
192 int mincount, in arg_filen() argument
200 maxcount = (maxcount<mincount) ? mincount : maxcount; in arg_filen()
218 result->hdr.mincount = mincount; in arg_filen()
H A Darg_rex.c92 int errorcode = (parent->count < parent->hdr.mincount) ? EMINCOUNT : 0; in checkfn()
165 int mincount, in arg_rexn() argument
182 maxcount = (maxcount<mincount) ? mincount : maxcount; in arg_rexn()
199 result->hdr.mincount = mincount; in arg_rexn()
H A Darg_int.c229 int errorcode = (parent->count < parent->hdr.mincount) ? EMINCOUNT : 0; in checkfn()
290 int mincount, in arg_intn() argument
298 maxcount = (maxcount<mincount) ? mincount : maxcount; in arg_intn()
312 result->hdr.mincount = mincount; in arg_intn()
/dports/net/sslh/sslh-1.21c/
H A Dargtable3.h81 int mincount; /* Minimum number of occurences of this option accepted */ member
170 int mincount,
182 int mincount,
197 int mincount,
212 int mincount,
227 int mincount,
247 int mincount,
263 int mincount,
281 int mincount,
/dports/textproc/multimarkdown/MultiMarkdown-6-6.6.0/src/
H A Dargtable3.h81 int mincount; /* Minimum number of occurences of this option accepted */
170 int mincount,
182 int mincount,
197 int mincount,
212 int mincount,
227 int mincount,
247 int mincount,
263 int mincount,
281 int mincount,
/dports/misc/heyu2/heyu-2.10/
H A Dx10aux.c971 int mincount; in aux_w800() local
1260 int *mincount; in aux_rfxcomvl() local
1357 mincount = &mincountq[rcvr]; in aux_rfxcomvl()
1416 *mincount = 1; in aux_rfxcomvl()
1614 if ( *count == *mincount ) in aux_rfxcomvl()
1635 if ( *count == *mincount ) in aux_rfxcomvl()
1748 int mincount; in aux_rfxcomvl() local
1859 mincount = 1; in aux_rfxcomvl()
2080 if ( count == mincount ) { in aux_rfxcomvl()
2085 if ( count == mincount ) in aux_rfxcomvl()
[all …]
/dports/math/gap/gap-4.11.0/pkg/Browse/app/
H A Dprofile.g121 mincount:= arg[1];
126 mincount:= arg[2];
148 if mincount < 0 then
149 mincount:= 0;
154 if mincount = 0 or mintime = 0 then
209 mincount:= t.dynamic.mincount;
221 if mincount <= i[ cntpos ]
330 if focus = "mincount" then
349 t.dynamic.mincount:= val[1];
538 mincount:= mincount,
[all …]
/dports/biology/py-biopython/biopython-1.79/Bio/SeqIO/
H A DInterfaces.py223 def write_file(self, records, mincount=0, maxcount=None): argument
239 if count < mincount:
240 if mincount == 1: # Common case
242 elif mincount == maxcount:
244 "Number of sequences is %d (expected %d)" % (count, mincount)
249 % (count, mincount)
/dports/biology/emboss/EMBOSS-6.6.0/emboss/
H A Dwordcount.c41 ajint mincount; in main() local
49 mincount = ajAcdGetInt("mincount"); in main()
58 embWordPrintTableFI(table, mincount, outf); /* print table of words */ in main()
/dports/devel/sfsexp/sfsexp-1.3.1-18-gc11b849/tests/
H A Drandsexp.pl42 $mincount = $ARGV[0];
54 while ($count < $mincount && length($s) < $maxlength) {
82 if ($count > ($mincount * 2)) {

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