/dports/biology/bbmap/bbmap/current/kmer/ |
H A D | KmerNode1D.java | 115 if(value>=mincount){ in dumpKmersAsBytes() 119 if(left!=null){left.dumpKmersAsBytes(bsw, k, mincount, maxcount, remaining);} in dumpKmersAsBytes() 120 if(right!=null){right.dumpKmersAsBytes(bsw, k, mincount, maxcount, remaining);} in dumpKmersAsBytes() 127 if(value>=mincount){ in dumpKmersAsBytes_MT() 137 if(left!=null){left.dumpKmersAsBytes_MT(bsw, bb, k, mincount, maxcount, remaining);} in dumpKmersAsBytes_MT() 138 if(right!=null){right.dumpKmersAsBytes_MT(bsw, bb, k, mincount, maxcount, remaining);} in dumpKmersAsBytes_MT() 146 if(value>=mincount){sb.append(AbstractKmerTable.toText(pivot, value, k)).append('\n');} in dumpKmersAsText() 147 if(left!=null){left.dumpKmersAsText(sb, k, mincount, maxcount);} in dumpKmersAsText() 148 if(right!=null){right.dumpKmersAsText(sb, k, mincount, maxcount);} in dumpKmersAsText() 157 if(left!=null){left.dumpKmersAsText(bb, k, mincount, maxcount);} in dumpKmersAsText() [all …]
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H A D | KmerNode2D.java | 244 …public final boolean dumpKmersAsBytes(ByteStreamWriter bsw, int k, int mincount, int maxcount, Ato… 248 if(left!=null){left.dumpKmersAsBytes(bsw, k, mincount, maxcount, remaining);} 249 if(right!=null){right.dumpKmersAsBytes(bsw, k, mincount, maxcount, remaining);} 264 if(left!=null){left.dumpKmersAsBytes_MT(bsw, bb, k, mincount, maxcount, remaining);} 265 if(right!=null){right.dumpKmersAsBytes_MT(bsw, bb, k, mincount, maxcount, remaining);} 270 protected final StringBuilder dumpKmersAsText(StringBuilder sb, int k, int mincount, int maxcount){ 274 if(left!=null){left.dumpKmersAsText(sb, k, mincount, maxcount);} 275 if(right!=null){right.dumpKmersAsText(sb, k, mincount, maxcount);} 280 protected final ByteBuilder dumpKmersAsText(ByteBuilder bb, int k, int mincount, int maxcount){ 284 if(left!=null){left.dumpKmersAsText(bb, k, mincount, maxcount);} [all …]
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H A D | KmerLink.java | 217 …public final boolean dumpKmersAsBytes(ByteStreamWriter bsw, int k, int mincount, int maxcount, Ato… in dumpKmersAsBytes() argument 219 if(value>=mincount){ in dumpKmersAsBytes() 223 if(next!=null){next.dumpKmersAsBytes(bsw, k, mincount, maxcount, remaining);} in dumpKmersAsBytes() 228 …inal ByteStreamWriter bsw, final ByteBuilder bb, final int k, final int mincount, int maxcount, At… in dumpKmersAsBytes_MT() argument 230 if(value>=mincount){ in dumpKmersAsBytes_MT() 240 if(next!=null){next.dumpKmersAsBytes_MT(bsw, bb, k, mincount, maxcount, remaining);} in dumpKmersAsBytes_MT() 245 public final boolean dumpKmersAsText(TextStreamWriter tsw, int k, int mincount, int maxcount) { in dumpKmersAsText() argument 246 tsw.print(dumpKmersAsText(new StringBuilder(32), k, mincount, maxcount)); in dumpKmersAsText() 250 private final StringBuilder dumpKmersAsText(StringBuilder sb, int k, int mincount, int maxcount){ in dumpKmersAsText() argument 253 if(value>=mincount){sb.append(AbstractKmerTable.toText(pivot, value, k)).append('\n');} in dumpKmersAsText() [all …]
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H A D | DumpThread.java | 19 …public static boolean dump(final int k, final int mincount, final int maxcount, final AbstractKmer… in dump() argument 24 list.add(new DumpThread(k, mincount, maxcount, lock, tables, bsw, remaining)); in dump() 44 mincount=mincount_; in DumpThread() 57 t.dumpKmersAsBytes_MT(bsw, bb, k, mincount, maxcount, remaining); in run() 66 final int mincount; field in DumpThread
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/dports/biology/bbmap/bbmap/current/ukmer/ |
H A D | KmerNodeU1D.java | 115 if(value>=mincount){ in dumpKmersAsBytes() 119 if(left!=null){left.dumpKmersAsBytes(bsw, k, mincount, maxcount, remaining);} in dumpKmersAsBytes() 120 if(right!=null){right.dumpKmersAsBytes(bsw, k, mincount, maxcount, remaining);} in dumpKmersAsBytes() 127 if(value>=mincount){ in dumpKmersAsBytes_MT() 137 if(left!=null){left.dumpKmersAsBytes_MT(bsw, bb, k, mincount, maxcount, remaining);} in dumpKmersAsBytes_MT() 138 if(right!=null){right.dumpKmersAsBytes_MT(bsw, bb, k, mincount, maxcount, remaining);} in dumpKmersAsBytes_MT() 146 if(value>=mincount){sb.append(AbstractKmerTableU.toText(pivot, value, k)).append('\n');} in dumpKmersAsText() 147 if(left!=null){left.dumpKmersAsText(sb, k, mincount, maxcount);} in dumpKmersAsText() 148 if(right!=null){right.dumpKmersAsText(sb, k, mincount, maxcount);} in dumpKmersAsText() 157 if(left!=null){left.dumpKmersAsText(bb, k, mincount, maxcount);} in dumpKmersAsText() [all …]
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H A D | KmerNodeU2D.java | 190 …public final boolean dumpKmersAsBytes(ByteStreamWriter bsw, int k, int mincount, int maxcount, Ato… in dumpKmersAsBytes() argument 194 if(left!=null){left.dumpKmersAsBytes(bsw, k, mincount, maxcount, remaining);} in dumpKmersAsBytes() 195 if(right!=null){right.dumpKmersAsBytes(bsw, k, mincount, maxcount, remaining);} in dumpKmersAsBytes() 210 if(left!=null){left.dumpKmersAsBytes_MT(bsw, bb, k, mincount, maxcount, remaining);} in dumpKmersAsBytes_MT() 211 if(right!=null){right.dumpKmersAsBytes_MT(bsw, bb, k, mincount, maxcount, remaining);} in dumpKmersAsBytes_MT() 216 protected final StringBuilder dumpKmersAsText(StringBuilder sb, int k, int mincount, int maxcount){ in dumpKmersAsText() argument 220 if(left!=null){left.dumpKmersAsText(sb, k, mincount, maxcount);} in dumpKmersAsText() 221 if(right!=null){right.dumpKmersAsText(sb, k, mincount, maxcount);} in dumpKmersAsText() 226 protected final ByteBuilder dumpKmersAsText(ByteBuilder bb, int k, int mincount, int maxcount){ in dumpKmersAsText() argument 230 if(left!=null){left.dumpKmersAsText(bb, k, mincount, maxcount);} in dumpKmersAsText() [all …]
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H A D | DumpThreadU.java | 20 …public static boolean dump(final int k, final int mincount, final int maxcount, final AbstractKmer… in dump() argument 25 list.add(new DumpThreadU(k, mincount, maxcount, lock, tables, bsw, remaining)); in dump() 45 mincount=mincount_; in DumpThreadU() 58 t.dumpKmersAsBytes_MT(bsw, bb, k, mincount, maxcount, remaining); in run() 67 final int mincount; field in DumpThreadU
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/dports/devel/upp/upp/bazaar/PixRaster/lib/ |
H A D | flipdetect.c | 262 l_int32 mincount, in pixOrientDetect() argument 275 if (mincount == 0) in pixOrientDetect() 455 if (mincount == 0) in pixUpDownDetectGeneral() 527 if (nmax > mincount) in pixUpDownDetectGeneral() 590 if (mincount == 0) in pixOrientDetectDwa() 671 if (mincount == 0) in pixUpDownDetectGeneralDwa() 741 if (nmax > mincount) in pixUpDownDetectGeneralDwa() 820 if (mincount == 0) in pixMirrorDetect() 859 if (nmax > mincount) in pixMirrorDetect() 911 if (mincount == 0) in pixMirrorDetectDwa() [all …]
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/dports/graphics/leptonica/leptonica-1.76.0/src/ |
H A D | flipdetect.c | 373 l_int32 mincount, in pixOrientDetect() argument 384 if (mincount == 0) in pixOrientDetect() 576 if (mincount == 0) in pixUpDownDetectGeneral() 650 if (nmax > mincount) in pixUpDownDetectGeneral() 713 if (mincount == 0) in pixOrientDetectDwa() 798 if (mincount == 0) in pixUpDownDetectGeneralDwa() 870 if (nmax > mincount) in pixUpDownDetectGeneralDwa() 951 if (mincount == 0) in pixMirrorDetect() 989 if (nmax > mincount) in pixMirrorDetect() 1043 if (mincount == 0) in pixMirrorDetectDwa() [all …]
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/dports/www/joomla3/joomla3-3.9.24/modules/mod_tags_popular/tmpl/ |
H A D | cloud.php | 23 $mincount = null; variable 27 if ($mincount === null || $mincount > $item->count) 29 $mincount = $item->count; variable 36 $countdiff = $maxcount - $mincount; 42 $fontsize = $minsize + (($maxsize - $minsize) / $countdiff) * ($item->count - $mincount);
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/dports/devel/argtable/argtable2-13/src/ |
H A D | argtable2.h | 71 int mincount; /* Minimum number of occurences of this option accepted */ member 160 int mincount, 172 int mincount, 187 int mincount, 202 int mincount, 217 int mincount, 237 int mincount, 253 int mincount, 271 int mincount,
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H A D | arg_lit.c | 55 int errorcode = (parent->count < parent->hdr.mincount) ? EMINCOUNT : 0; in checkfn() 94 int mincount, in arg_litn() argument 101 maxcount = (maxcount<mincount) ? mincount : maxcount; in arg_litn() 112 result->hdr.mincount = mincount; in arg_litn()
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H A D | arg_str.c | 69 int errorcode = (parent->count < parent->hdr.mincount) ? EMINCOUNT : 0; in checkfn() 119 int mincount, in arg_strn() argument 127 maxcount = (maxcount<mincount) ? mincount : maxcount; in arg_strn() 143 result->hdr.mincount = mincount; in arg_strn()
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H A D | arg_dbl.c | 79 int errorcode = (parent->count < parent->hdr.mincount) ? EMINCOUNT : 0; in checkfn() 134 int mincount, in arg_dbln() argument 142 maxcount = (maxcount<mincount) ? mincount : maxcount; in arg_dbln() 159 result->hdr.mincount = mincount; in arg_dbln()
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H A D | arg_date.c | 81 int errorcode = (parent->count < parent->hdr.mincount) ? EMINCOUNT : 0; in checkfn() 148 int mincount, in arg_daten() argument 156 maxcount = (maxcount<mincount) ? mincount : maxcount; in arg_daten() 176 result->hdr.mincount = mincount; in arg_daten()
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H A D | arg_file.c | 137 int errorcode = (parent->count < parent->hdr.mincount) ? EMINCOUNT : 0; in checkfn() 192 int mincount, in arg_filen() argument 200 maxcount = (maxcount<mincount) ? mincount : maxcount; in arg_filen() 218 result->hdr.mincount = mincount; in arg_filen()
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H A D | arg_rex.c | 92 int errorcode = (parent->count < parent->hdr.mincount) ? EMINCOUNT : 0; in checkfn() 165 int mincount, in arg_rexn() argument 182 maxcount = (maxcount<mincount) ? mincount : maxcount; in arg_rexn() 199 result->hdr.mincount = mincount; in arg_rexn()
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H A D | arg_int.c | 229 int errorcode = (parent->count < parent->hdr.mincount) ? EMINCOUNT : 0; in checkfn() 290 int mincount, in arg_intn() argument 298 maxcount = (maxcount<mincount) ? mincount : maxcount; in arg_intn() 312 result->hdr.mincount = mincount; in arg_intn()
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/dports/net/sslh/sslh-1.21c/ |
H A D | argtable3.h | 81 int mincount; /* Minimum number of occurences of this option accepted */ member 170 int mincount, 182 int mincount, 197 int mincount, 212 int mincount, 227 int mincount, 247 int mincount, 263 int mincount, 281 int mincount,
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/dports/textproc/multimarkdown/MultiMarkdown-6-6.6.0/src/ |
H A D | argtable3.h | 81 int mincount; /* Minimum number of occurences of this option accepted */ 170 int mincount, 182 int mincount, 197 int mincount, 212 int mincount, 227 int mincount, 247 int mincount, 263 int mincount, 281 int mincount,
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/dports/misc/heyu2/heyu-2.10/ |
H A D | x10aux.c | 971 int mincount; in aux_w800() local 1260 int *mincount; in aux_rfxcomvl() local 1357 mincount = &mincountq[rcvr]; in aux_rfxcomvl() 1416 *mincount = 1; in aux_rfxcomvl() 1614 if ( *count == *mincount ) in aux_rfxcomvl() 1635 if ( *count == *mincount ) in aux_rfxcomvl() 1748 int mincount; in aux_rfxcomvl() local 1859 mincount = 1; in aux_rfxcomvl() 2080 if ( count == mincount ) { in aux_rfxcomvl() 2085 if ( count == mincount ) in aux_rfxcomvl() [all …]
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/dports/math/gap/gap-4.11.0/pkg/Browse/app/ |
H A D | profile.g | 121 mincount:= arg[1]; 126 mincount:= arg[2]; 148 if mincount < 0 then 149 mincount:= 0; 154 if mincount = 0 or mintime = 0 then 209 mincount:= t.dynamic.mincount; 221 if mincount <= i[ cntpos ] 330 if focus = "mincount" then 349 t.dynamic.mincount:= val[1]; 538 mincount:= mincount, [all …]
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/dports/biology/py-biopython/biopython-1.79/Bio/SeqIO/ |
H A D | Interfaces.py | 223 def write_file(self, records, mincount=0, maxcount=None): argument 239 if count < mincount: 240 if mincount == 1: # Common case 242 elif mincount == maxcount: 244 "Number of sequences is %d (expected %d)" % (count, mincount) 249 % (count, mincount)
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/dports/biology/emboss/EMBOSS-6.6.0/emboss/ |
H A D | wordcount.c | 41 ajint mincount; in main() local 49 mincount = ajAcdGetInt("mincount"); in main() 58 embWordPrintTableFI(table, mincount, outf); /* print table of words */ in main()
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/dports/devel/sfsexp/sfsexp-1.3.1-18-gc11b849/tests/ |
H A D | randsexp.pl | 42 $mincount = $ARGV[0]; 54 while ($count < $mincount && length($s) < $maxlength) { 82 if ($count > ($mincount * 2)) {
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