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Searched refs:minsc (Results 1 – 25 of 49) sorted by relevance

12

/dports/biology/hisat2/hisat2-2.2.1/
H A Dbp_aligner.h319 if(rdi == 0) minsc = max(minsc, sink.bestUnp1()); in hybridSearch_recur()
320 else minsc = max(minsc, sink.bestUnp2()); in hybridSearch_recur()
523 if(rdi == 0) minsc = max(minsc, sink.bestUnp1()); in hybridSearch_recur()
524 else minsc = max(minsc, sink.bestUnp2()); in hybridSearch_recur()
560 if(rdi == 0) minsc = max(minsc, sink.bestUnp1()); in hybridSearch_recur()
708 if(rdi == 0) minsc = max(minsc, sink.bestUnp1()); in hybridSearch_recur()
709 else minsc = max(minsc, sink.bestUnp2()); in hybridSearch_recur()
790 if(rdi == 0) minsc = max(minsc, sink.bestUnp1()); in hybridSearch_recur()
791 else minsc = max(minsc, sink.bestUnp2()); in hybridSearch_recur()
1182 if(rdi == 0) minsc = max(minsc, sink.bestUnp1()); in hybridSearch_recur()
[all …]
H A Dspliced_aligner.h515 if(rdi == 0) minsc = max(minsc, sink.bestUnp1()); in hybridSearch_recur()
516 else minsc = max(minsc, sink.bestUnp2()); in hybridSearch_recur()
632 if(rdi == 0) minsc = max(minsc, sink.bestUnp1()); in hybridSearch_recur()
633 else minsc = max(minsc, sink.bestUnp2()); in hybridSearch_recur()
776 if(rdi == 0) minsc = max(minsc, sink.bestUnp1() - cushion); in hybridSearch_recur()
777 else minsc = max(minsc, sink.bestUnp2() - cushion); in hybridSearch_recur()
998 if(rdi == 0) minsc = max(minsc, sink.bestUnp1() - cushion); in hybridSearch_recur()
1296 if(rdi == 0) minsc = max(minsc, sink.bestUnp1() - cushion); in hybridSearch_recur()
1297 else minsc = max(minsc, sink.bestUnp2() - cushion); in hybridSearch_recur()
1983 if(rdi == 0) minsc = max(minsc, sink.bestUnp1() - cushion); in hybridSearch_recur()
[all …]
H A Dscoring.cpp30 int64_t minsc, in scoreFilter() argument
34 return sc >= minsc; in scoreFilter()
43 int64_t minsc, in maxReadGaps() argument
49 assert_geq(sc, minsc); in maxReadGaps()
53 while(sc >= minsc) { in maxReadGaps()
74 int64_t minsc, in maxRefGaps() argument
80 assert_geq(sc, minsc); in maxRefGaps()
84 while(sc >= minsc) { in maxRefGaps()
H A Daligner_sw_driver.h1375 if(minsc == perfectScore) { in extendSeeds()
1565 minsc, in extendSeeds()
1791 minsc++; in extendSeeds()
1798 minsc++; in extendSeeds()
1804 if(bot >= minsc) { in extendSeeds()
1805 minsc = bot; in extendSeeds()
1807 minsc++; in extendSeeds()
2006 if(nc > minsc) { in extendSeedsPaired()
2007 minsc = nc; in extendSeedsPaired()
2778 if(nc > minsc) { in extendSeedsPaired()
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H A Daligner_driver.h167 TAlScore minsc, in initRead() argument
171 dr1_.initRead(q1, nofw, norc, minsc, maxpen, q2, &sel_); in initRead()
175 dr2_.initRead(*q2, nofw, norc, minsc, maxpen, &q1, &sel_); in initRead()
H A Daligner_sw.h262 TAlScore minsc, // minimum score
289 TAlScore minsc, // minimum alignment score
317 TAlScore minsc, // minimum score
334 TAlScore minsc,
/dports/net/h323plus/h323plus-1_27_2/plugins/audio/LPC_10/src/
H A Ddyptrk.c153 real alpha, minsc, maxsc; in dyptrk_() local
365 minsc = s[0]; in dyptrk_()
366 maxsc = minsc; in dyptrk_()
374 if (s[i__ - 1] < minsc) { in dyptrk_()
376 minsc = s[i__ - 1]; in dyptrk_()
382 s[i__ - 1] -= minsc; in dyptrk_()
384 maxsc -= minsc; in dyptrk_()
/dports/net/opal/opal-3.10.10/plugins/audio/LPC_10/src/
H A Ddyptrk.c153 real alpha, minsc, maxsc; in dyptrk_() local
365 minsc = s[0]; in dyptrk_()
366 maxsc = minsc; in dyptrk_()
374 if (s[i__ - 1] < minsc) { in dyptrk_()
376 minsc = s[i__ - 1]; in dyptrk_()
382 s[i__ - 1] -= minsc; in dyptrk_()
384 maxsc -= minsc; in dyptrk_()
/dports/audio/sox/sox-14.4.2/lpc10/
H A Ddyptrk.c119 real alpha, minsc, maxsc;
294 minsc = s[0];
295 maxsc = minsc;
303 if (s[i__ - 1] < minsc) {
305 minsc = s[i__ - 1];
311 s[i__ - 1] -= minsc;
313 maxsc -= minsc;
/dports/math/xspread/xspread-3.1.1c.orig/
H A Dmatrix.c51 int minsr, minsc; in get_trans() local
79 minsc = v1->col; in get_trans()
81 if (minsc>maxsc) c = maxsc, maxsc = minsc, minsc = c; in get_trans()
93 if (minsr == maxsr && minsc == maxsc) { in get_trans()
102 } else if (minsc == maxsc) { in get_trans()
203 int vr, vc, minsr, minsc, maxsr, maxsc; in transpose()
860 int minsr, minsc; in get_invert() local
901 minsc = v1->col; in get_invert()
903 if (minsc>maxsc) c = maxsc, maxsc = minsc, minsc = c; in get_invert()
936 int vr, vc, minsr, minsc, maxsr, maxsc; in invertmatrix()
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/dports/biology/bowtie2/bowtie2-2.4.4/
H A Dscoring.cpp30 int64_t minsc, in scoreFilter() argument
34 return sc >= minsc; in scoreFilter()
43 int64_t minsc, in maxReadGaps() argument
49 assert_geq(sc, minsc); in maxReadGaps()
53 while(sc >= minsc) { in maxReadGaps()
74 int64_t minsc, in maxRefGaps() argument
80 assert_geq(sc, minsc); in maxRefGaps()
84 while(sc >= minsc) { in maxRefGaps()
H A Daligner_sw_driver.cpp1042 minsc, in extendSeeds()
1264 minsc++; in extendSeeds()
1271 minsc++; in extendSeeds()
1277 if(bot >= minsc) { in extendSeeds()
1278 minsc = bot; in extendSeeds()
1280 minsc++; in extendSeeds()
1477 if(nc > minsc) { in extendSeedsPaired()
1478 minsc = nc; in extendSeedsPaired()
1751 minsc, // minimum in extendSeedsPaired()
2248 if(nc > minsc) { in extendSeedsPaired()
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H A Dbt2_search.cpp2843 TAlScore *minsc, in setupMinScores() argument
2860 if(minsc[0] < 0) { in setupMinScores()
2862 minsc[0] = 0; in setupMinScores()
2866 minsc[1] = 0; in setupMinScores()
2869 if(minsc[0] > 0) { in setupMinScores()
2871 minsc[0] = 0; in setupMinScores()
2875 minsc[1] = 0; in setupMinScores()
3216 minsc[0] = minsc[1] = std::numeric_limits<TAlScore>::max(); in multiseedSearchWorker()
3233 minsc[0] = 0; in multiseedSearchWorker()
3237 minsc[1] = 0; in multiseedSearchWorker()
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H A Daligner_driver.h224 TAlScore minsc, in initRead() argument
230 dr1_.initRead(q1, nofw, norc, minsc, maxpen, q2, sel_); in initRead()
236 dr2_.initRead(*q2, nofw, norc, minsc, maxpen, &q1, sel_); in initRead()
H A Daligner_sw.h262 TAlScore minsc, // minimum score
289 TAlScore minsc, // minimum alignment score
319 TAlScore minsc, // minimum score
336 TAlScore minsc,
H A Dscoring.h362 int64_t minsc,
371 int64_t minsc,
380 int64_t minsc,
/dports/biology/trimadap/trimadap-0.1-3-gddfef21/
H A Dksw.c109 int slen, i, m_b, n_b, te = -1, gmax = 0, minsc, endsc; in ksw_u8() local
124 minsc = (xtra&KSW_XSUBO)? xtra&0xffff : 0x10000; in ksw_u8()
226 int slen, i, m_b, n_b, te = -1, gmax = 0, minsc, endsc; in ksw_i16() local
240 minsc = (xtra&KSW_XSUBO)? xtra&0xffff : 0x10000; in ksw_i16()
287 if (imax >= minsc) { in ksw_i16()
393 int gapo = 5, gape = 2, minsc = 0, xtra = KSW_XSTART; in main() local
405 case 't': minsc = atoi(optarg); break; in main()
414 if (minsc > 0xffff) minsc = 0xffff; in main()
415 xtra |= KSW_XSUBO | minsc; in main()
443 if (r.score >= minsc) in main()
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/dports/games/xpilot/xpilot-4.5.5/src/server/
H A Dserver.c641 long maxsc, minsc; in Game_Over() local
655 minsc = 32767; in Game_Over()
678 if (teamscore[i] < minsc) { in Game_Over()
679 minsc = teamscore[i]; in Game_Over()
692 sprintf(msg,"Worst team (%ld Pts): Team %d", minsc, loose); in Game_Over()
699 minsc = 32767; in Game_Over()
709 if (Players[i]->score < minsc) { in Game_Over()
710 minsc = Players[i]->score; in Game_Over()
/dports/games/xpilot-ng-server/xpilot-ng-4.7.3/src/server/
H A Dserver.c612 double maxsc, minsc; in Game_Over() local
649 minsc = FLT_MAX; in Game_Over()
657 if (teamscore[i] < minsc) { in Game_Over()
658 minsc = teamscore[i]; in Game_Over()
673 minsc, lose_team); in Game_Over()
680 minsc = FLT_MAX; in Game_Over()
694 if (Get_Score(pl_i) < minsc) { in Game_Over()
695 minsc = Get_Score(pl_i); in Game_Over()
/dports/www/h2o-devel/h2o-dcc7134/deps/klib/
H A Dksw.c108 int slen, i, m_b, n_b, te = -1, gmax = 0, minsc, endsc; in ksw_u8() local
123 minsc = (xtra&KSW_XSUBO)? xtra&0xffff : 0x10000; in ksw_u8()
225 int slen, i, m_b, n_b, te = -1, gmax = 0, minsc, endsc; in ksw_i16() local
239 minsc = (xtra&KSW_XSUBO)? xtra&0xffff : 0x10000; in ksw_i16()
286 if (imax >= minsc) { in ksw_i16()
568 int gapo = 5, gape = 2, minsc = 0, xtra = KSW_XSTART; in main() local
580 case 't': minsc = atoi(optarg); break; in main()
589 if (minsc > 0xffff) minsc = 0xffff; in main()
590 xtra |= KSW_XSUBO | minsc; in main()
618 if (r.score >= minsc) in main()
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/dports/biology/bwa/bwa-0.7.17/
H A Dksw.c115 int slen, i, m_b, n_b, te = -1, gmax = 0, minsc, endsc; in ksw_u8() local
130 minsc = (xtra&KSW_XSUBO)? xtra&0xffff : 0x10000; in ksw_u8()
236 int slen, i, m_b, n_b, te = -1, gmax = 0, minsc, endsc; in ksw_i16() local
250 minsc = (xtra&KSW_XSUBO)? xtra&0xffff : 0x10000; in ksw_i16()
300 if (imax >= minsc) { in ksw_i16()
650 int gapo = 5, gape = 2, minsc = 0, xtra = KSW_XSTART; in main() local
662 case 't': minsc = atoi(optarg); break; in main()
671 if (minsc > 0xffff) minsc = 0xffff; in main()
672 xtra |= KSW_XSUBO | minsc; in main()
700 if (r.score >= minsc) in main()
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/dports/cad/PrusaSlicer/PrusaSlicer-version_2.3.3/src/libslic3r/
H A DTriangulateWall.cpp60 auto minsc = Slic3r::score(*onring, lring, *pts); in synchronize_rings() local
67 if (score < minsc) { minsc = score; imin = lring.pos().first; } in synchronize_rings()
/dports/net/iaxmodem/iaxmodem-1.2.0/lib/spandsp/src/
H A Dlpc10_analyse.c211 float minsc; in dynamic_pitch_tracking() local
264 minsc = s->s[0]; in dynamic_pitch_tracking()
265 maxsc = minsc; in dynamic_pitch_tracking()
272 if (s->s[i] < minsc) in dynamic_pitch_tracking()
275 minsc = s->s[i]; in dynamic_pitch_tracking()
280 s->s[i] -= minsc; in dynamic_pitch_tracking()
281 maxsc -= minsc; in dynamic_pitch_tracking()
/dports/net/freeswitch/freeswitch-1.10.3.-release/libs/spandsp/src/
H A Dlpc10_analyse.c213 float minsc; in dynamic_pitch_tracking() local
266 minsc = s->s[0]; in dynamic_pitch_tracking()
267 maxsc = minsc; in dynamic_pitch_tracking()
274 if (s->s[i] < minsc) in dynamic_pitch_tracking()
277 minsc = s->s[i]; in dynamic_pitch_tracking()
282 s->s[i] -= minsc; in dynamic_pitch_tracking()
283 maxsc -= minsc; in dynamic_pitch_tracking()
/dports/comms/spandsp/spandsp-284fe91/src/
H A Dlpc10_analyse.c213 float minsc; in dynamic_pitch_tracking() local
266 minsc = s->s[0]; in dynamic_pitch_tracking()
267 maxsc = minsc; in dynamic_pitch_tracking()
274 if (s->s[i] < minsc) in dynamic_pitch_tracking()
277 minsc = s->s[i]; in dynamic_pitch_tracking()
282 s->s[i] -= minsc; in dynamic_pitch_tracking()
283 maxsc -= minsc; in dynamic_pitch_tracking()

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