/dports/biology/hisat2/hisat2-2.2.1/ |
H A D | bp_aligner.h | 319 if(rdi == 0) minsc = max(minsc, sink.bestUnp1()); in hybridSearch_recur() 320 else minsc = max(minsc, sink.bestUnp2()); in hybridSearch_recur() 523 if(rdi == 0) minsc = max(minsc, sink.bestUnp1()); in hybridSearch_recur() 524 else minsc = max(minsc, sink.bestUnp2()); in hybridSearch_recur() 560 if(rdi == 0) minsc = max(minsc, sink.bestUnp1()); in hybridSearch_recur() 708 if(rdi == 0) minsc = max(minsc, sink.bestUnp1()); in hybridSearch_recur() 709 else minsc = max(minsc, sink.bestUnp2()); in hybridSearch_recur() 790 if(rdi == 0) minsc = max(minsc, sink.bestUnp1()); in hybridSearch_recur() 791 else minsc = max(minsc, sink.bestUnp2()); in hybridSearch_recur() 1182 if(rdi == 0) minsc = max(minsc, sink.bestUnp1()); in hybridSearch_recur() [all …]
|
H A D | spliced_aligner.h | 515 if(rdi == 0) minsc = max(minsc, sink.bestUnp1()); in hybridSearch_recur() 516 else minsc = max(minsc, sink.bestUnp2()); in hybridSearch_recur() 632 if(rdi == 0) minsc = max(minsc, sink.bestUnp1()); in hybridSearch_recur() 633 else minsc = max(minsc, sink.bestUnp2()); in hybridSearch_recur() 776 if(rdi == 0) minsc = max(minsc, sink.bestUnp1() - cushion); in hybridSearch_recur() 777 else minsc = max(minsc, sink.bestUnp2() - cushion); in hybridSearch_recur() 998 if(rdi == 0) minsc = max(minsc, sink.bestUnp1() - cushion); in hybridSearch_recur() 1296 if(rdi == 0) minsc = max(minsc, sink.bestUnp1() - cushion); in hybridSearch_recur() 1297 else minsc = max(minsc, sink.bestUnp2() - cushion); in hybridSearch_recur() 1983 if(rdi == 0) minsc = max(minsc, sink.bestUnp1() - cushion); in hybridSearch_recur() [all …]
|
H A D | scoring.cpp | 30 int64_t minsc, in scoreFilter() argument 34 return sc >= minsc; in scoreFilter() 43 int64_t minsc, in maxReadGaps() argument 49 assert_geq(sc, minsc); in maxReadGaps() 53 while(sc >= minsc) { in maxReadGaps() 74 int64_t minsc, in maxRefGaps() argument 80 assert_geq(sc, minsc); in maxRefGaps() 84 while(sc >= minsc) { in maxRefGaps()
|
H A D | aligner_sw_driver.h | 1375 if(minsc == perfectScore) { in extendSeeds() 1565 minsc, in extendSeeds() 1791 minsc++; in extendSeeds() 1798 minsc++; in extendSeeds() 1804 if(bot >= minsc) { in extendSeeds() 1805 minsc = bot; in extendSeeds() 1807 minsc++; in extendSeeds() 2006 if(nc > minsc) { in extendSeedsPaired() 2007 minsc = nc; in extendSeedsPaired() 2778 if(nc > minsc) { in extendSeedsPaired() [all …]
|
H A D | aligner_driver.h | 167 TAlScore minsc, in initRead() argument 171 dr1_.initRead(q1, nofw, norc, minsc, maxpen, q2, &sel_); in initRead() 175 dr2_.initRead(*q2, nofw, norc, minsc, maxpen, &q1, &sel_); in initRead()
|
H A D | aligner_sw.h | 262 TAlScore minsc, // minimum score 289 TAlScore minsc, // minimum alignment score 317 TAlScore minsc, // minimum score 334 TAlScore minsc,
|
/dports/net/h323plus/h323plus-1_27_2/plugins/audio/LPC_10/src/ |
H A D | dyptrk.c | 153 real alpha, minsc, maxsc; in dyptrk_() local 365 minsc = s[0]; in dyptrk_() 366 maxsc = minsc; in dyptrk_() 374 if (s[i__ - 1] < minsc) { in dyptrk_() 376 minsc = s[i__ - 1]; in dyptrk_() 382 s[i__ - 1] -= minsc; in dyptrk_() 384 maxsc -= minsc; in dyptrk_()
|
/dports/net/opal/opal-3.10.10/plugins/audio/LPC_10/src/ |
H A D | dyptrk.c | 153 real alpha, minsc, maxsc; in dyptrk_() local 365 minsc = s[0]; in dyptrk_() 366 maxsc = minsc; in dyptrk_() 374 if (s[i__ - 1] < minsc) { in dyptrk_() 376 minsc = s[i__ - 1]; in dyptrk_() 382 s[i__ - 1] -= minsc; in dyptrk_() 384 maxsc -= minsc; in dyptrk_()
|
/dports/audio/sox/sox-14.4.2/lpc10/ |
H A D | dyptrk.c | 119 real alpha, minsc, maxsc; 294 minsc = s[0]; 295 maxsc = minsc; 303 if (s[i__ - 1] < minsc) { 305 minsc = s[i__ - 1]; 311 s[i__ - 1] -= minsc; 313 maxsc -= minsc;
|
/dports/math/xspread/xspread-3.1.1c.orig/ |
H A D | matrix.c | 51 int minsr, minsc; in get_trans() local 79 minsc = v1->col; in get_trans() 81 if (minsc>maxsc) c = maxsc, maxsc = minsc, minsc = c; in get_trans() 93 if (minsr == maxsr && minsc == maxsc) { in get_trans() 102 } else if (minsc == maxsc) { in get_trans() 203 int vr, vc, minsr, minsc, maxsr, maxsc; in transpose() 860 int minsr, minsc; in get_invert() local 901 minsc = v1->col; in get_invert() 903 if (minsc>maxsc) c = maxsc, maxsc = minsc, minsc = c; in get_invert() 936 int vr, vc, minsr, minsc, maxsr, maxsc; in invertmatrix() [all …]
|
/dports/biology/bowtie2/bowtie2-2.4.4/ |
H A D | scoring.cpp | 30 int64_t minsc, in scoreFilter() argument 34 return sc >= minsc; in scoreFilter() 43 int64_t minsc, in maxReadGaps() argument 49 assert_geq(sc, minsc); in maxReadGaps() 53 while(sc >= minsc) { in maxReadGaps() 74 int64_t minsc, in maxRefGaps() argument 80 assert_geq(sc, minsc); in maxRefGaps() 84 while(sc >= minsc) { in maxRefGaps()
|
H A D | aligner_sw_driver.cpp | 1042 minsc, in extendSeeds() 1264 minsc++; in extendSeeds() 1271 minsc++; in extendSeeds() 1277 if(bot >= minsc) { in extendSeeds() 1278 minsc = bot; in extendSeeds() 1280 minsc++; in extendSeeds() 1477 if(nc > minsc) { in extendSeedsPaired() 1478 minsc = nc; in extendSeedsPaired() 1751 minsc, // minimum in extendSeedsPaired() 2248 if(nc > minsc) { in extendSeedsPaired() [all …]
|
H A D | bt2_search.cpp | 2843 TAlScore *minsc, in setupMinScores() argument 2860 if(minsc[0] < 0) { in setupMinScores() 2862 minsc[0] = 0; in setupMinScores() 2866 minsc[1] = 0; in setupMinScores() 2869 if(minsc[0] > 0) { in setupMinScores() 2871 minsc[0] = 0; in setupMinScores() 2875 minsc[1] = 0; in setupMinScores() 3216 minsc[0] = minsc[1] = std::numeric_limits<TAlScore>::max(); in multiseedSearchWorker() 3233 minsc[0] = 0; in multiseedSearchWorker() 3237 minsc[1] = 0; in multiseedSearchWorker() [all …]
|
H A D | aligner_driver.h | 224 TAlScore minsc, in initRead() argument 230 dr1_.initRead(q1, nofw, norc, minsc, maxpen, q2, sel_); in initRead() 236 dr2_.initRead(*q2, nofw, norc, minsc, maxpen, &q1, sel_); in initRead()
|
H A D | aligner_sw.h | 262 TAlScore minsc, // minimum score 289 TAlScore minsc, // minimum alignment score 319 TAlScore minsc, // minimum score 336 TAlScore minsc,
|
H A D | scoring.h | 362 int64_t minsc, 371 int64_t minsc, 380 int64_t minsc,
|
/dports/biology/trimadap/trimadap-0.1-3-gddfef21/ |
H A D | ksw.c | 109 int slen, i, m_b, n_b, te = -1, gmax = 0, minsc, endsc; in ksw_u8() local 124 minsc = (xtra&KSW_XSUBO)? xtra&0xffff : 0x10000; in ksw_u8() 226 int slen, i, m_b, n_b, te = -1, gmax = 0, minsc, endsc; in ksw_i16() local 240 minsc = (xtra&KSW_XSUBO)? xtra&0xffff : 0x10000; in ksw_i16() 287 if (imax >= minsc) { in ksw_i16() 393 int gapo = 5, gape = 2, minsc = 0, xtra = KSW_XSTART; in main() local 405 case 't': minsc = atoi(optarg); break; in main() 414 if (minsc > 0xffff) minsc = 0xffff; in main() 415 xtra |= KSW_XSUBO | minsc; in main() 443 if (r.score >= minsc) in main() [all …]
|
/dports/games/xpilot/xpilot-4.5.5/src/server/ |
H A D | server.c | 641 long maxsc, minsc; in Game_Over() local 655 minsc = 32767; in Game_Over() 678 if (teamscore[i] < minsc) { in Game_Over() 679 minsc = teamscore[i]; in Game_Over() 692 sprintf(msg,"Worst team (%ld Pts): Team %d", minsc, loose); in Game_Over() 699 minsc = 32767; in Game_Over() 709 if (Players[i]->score < minsc) { in Game_Over() 710 minsc = Players[i]->score; in Game_Over()
|
/dports/games/xpilot-ng-server/xpilot-ng-4.7.3/src/server/ |
H A D | server.c | 612 double maxsc, minsc; in Game_Over() local 649 minsc = FLT_MAX; in Game_Over() 657 if (teamscore[i] < minsc) { in Game_Over() 658 minsc = teamscore[i]; in Game_Over() 673 minsc, lose_team); in Game_Over() 680 minsc = FLT_MAX; in Game_Over() 694 if (Get_Score(pl_i) < minsc) { in Game_Over() 695 minsc = Get_Score(pl_i); in Game_Over()
|
/dports/www/h2o-devel/h2o-dcc7134/deps/klib/ |
H A D | ksw.c | 108 int slen, i, m_b, n_b, te = -1, gmax = 0, minsc, endsc; in ksw_u8() local 123 minsc = (xtra&KSW_XSUBO)? xtra&0xffff : 0x10000; in ksw_u8() 225 int slen, i, m_b, n_b, te = -1, gmax = 0, minsc, endsc; in ksw_i16() local 239 minsc = (xtra&KSW_XSUBO)? xtra&0xffff : 0x10000; in ksw_i16() 286 if (imax >= minsc) { in ksw_i16() 568 int gapo = 5, gape = 2, minsc = 0, xtra = KSW_XSTART; in main() local 580 case 't': minsc = atoi(optarg); break; in main() 589 if (minsc > 0xffff) minsc = 0xffff; in main() 590 xtra |= KSW_XSUBO | minsc; in main() 618 if (r.score >= minsc) in main() [all …]
|
/dports/biology/bwa/bwa-0.7.17/ |
H A D | ksw.c | 115 int slen, i, m_b, n_b, te = -1, gmax = 0, minsc, endsc; in ksw_u8() local 130 minsc = (xtra&KSW_XSUBO)? xtra&0xffff : 0x10000; in ksw_u8() 236 int slen, i, m_b, n_b, te = -1, gmax = 0, minsc, endsc; in ksw_i16() local 250 minsc = (xtra&KSW_XSUBO)? xtra&0xffff : 0x10000; in ksw_i16() 300 if (imax >= minsc) { in ksw_i16() 650 int gapo = 5, gape = 2, minsc = 0, xtra = KSW_XSTART; in main() local 662 case 't': minsc = atoi(optarg); break; in main() 671 if (minsc > 0xffff) minsc = 0xffff; in main() 672 xtra |= KSW_XSUBO | minsc; in main() 700 if (r.score >= minsc) in main() [all …]
|
/dports/cad/PrusaSlicer/PrusaSlicer-version_2.3.3/src/libslic3r/ |
H A D | TriangulateWall.cpp | 60 auto minsc = Slic3r::score(*onring, lring, *pts); in synchronize_rings() local 67 if (score < minsc) { minsc = score; imin = lring.pos().first; } in synchronize_rings()
|
/dports/net/iaxmodem/iaxmodem-1.2.0/lib/spandsp/src/ |
H A D | lpc10_analyse.c | 211 float minsc; in dynamic_pitch_tracking() local 264 minsc = s->s[0]; in dynamic_pitch_tracking() 265 maxsc = minsc; in dynamic_pitch_tracking() 272 if (s->s[i] < minsc) in dynamic_pitch_tracking() 275 minsc = s->s[i]; in dynamic_pitch_tracking() 280 s->s[i] -= minsc; in dynamic_pitch_tracking() 281 maxsc -= minsc; in dynamic_pitch_tracking()
|
/dports/net/freeswitch/freeswitch-1.10.3.-release/libs/spandsp/src/ |
H A D | lpc10_analyse.c | 213 float minsc; in dynamic_pitch_tracking() local 266 minsc = s->s[0]; in dynamic_pitch_tracking() 267 maxsc = minsc; in dynamic_pitch_tracking() 274 if (s->s[i] < minsc) in dynamic_pitch_tracking() 277 minsc = s->s[i]; in dynamic_pitch_tracking() 282 s->s[i] -= minsc; in dynamic_pitch_tracking() 283 maxsc -= minsc; in dynamic_pitch_tracking()
|
/dports/comms/spandsp/spandsp-284fe91/src/ |
H A D | lpc10_analyse.c | 213 float minsc; in dynamic_pitch_tracking() local 266 minsc = s->s[0]; in dynamic_pitch_tracking() 267 maxsc = minsc; in dynamic_pitch_tracking() 274 if (s->s[i] < minsc) in dynamic_pitch_tracking() 277 minsc = s->s[i]; in dynamic_pitch_tracking() 282 s->s[i] -= minsc; in dynamic_pitch_tracking() 283 maxsc -= minsc; in dynamic_pitch_tracking()
|