| /dports/graphics/mirtk/MIRTK-2.0.0-122-g38210fa/Modules/Image/include/mirtk/ |
| H A D | InterpolateImageFunction.hxx | 28 namespace mirtk { namespace
126 template class clsname<mirtk::BaseImage>; \
127 template class clsname<mirtk::GenericImage<mirtk::GreyPixel> >; \
128 template class clsname<mirtk::GenericImage<float> >; \
129 template class clsname<mirtk::GenericImage<float2> >; \
130 template class clsname<mirtk::GenericImage<float3> >; \
131 template class clsname<mirtk::GenericImage<mirtk::Float3> >; \
132 template class clsname<mirtk::GenericImage<float3x3> >; \
136 template class clsname<mirtk::GenericImage<mirtk::Double3> >; \
137 template class clsname<mirtk::GenericImage<double3x3> >
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| H A D | ImageReaderFactory.h | 28 namespace mirtk {
95 mirtk::ImageReaderFactory::Instance() \
96 .Register(mirtk::New<mirtk::ImageReader, type>)
104 mirtk::ImageReaderFactory::Instance() \
105 .Register(mirtk::New<mirtk::ImageReader, type>); \
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| H A D | ImageWriterFactory.h | 31 namespace mirtk {
97 mirtk::ImageWriterFactory::Instance() \
98 .Register(type::Extensions(), mirtk::New<mirtk::ImageWriter, type>)
106 mirtk::ImageWriterFactory::Instance() \
107 .Register(type::Extensions(), mirtk::New<mirtk::ImageWriter, type>); \
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| H A D | ImageGradientFunction.hxx | 26 namespace mirtk { namespace
124 template class clsname<mirtk::BaseImage>; \
125 template class clsname<mirtk::GenericImage<mirtk::GreyPixel> >; \
126 template class clsname<mirtk::GenericImage<float> >; \
127 template class clsname<mirtk::GenericImage<double> >
150 namespace mirtk { namespace
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| /dports/graphics/mirtk/MIRTK-2.0.0-122-g38210fa/Documentation/ |
| H A D | getstarted.rst | 25 the pre-made `biomedia/mirtk <https://hub.docker.com/r/biomedia/mirtk/>`_
40 chmod a+x mirtk
41 sudo mv mirtk /usr/bin
61 and `docker-mirtk <https://raw.githubusercontent.com/BioMedIA/MIRTK/master/Docker/Completion/Bash/d…
69 …com/BioMedIA/MIRTK/master/Docker/Completion/Bash/docker-mirtk > /etc/bash_completion.d/docker-mirtk
81 [ ! -f "$HOME/bash_completion/docker-mirtk" ] || . "$HOME/bash_completion/docker-mirtk"
97 [ ! -f "$HOME/bash_completion/mirtk" ] || . "$HOME/bash_completion/mirtk"
109 mirtk help <command>
110 mirtk [-v] [-v] <command> [options]
140 press the <tab> key twice after typing "mirtk " or "docker run biomedia/mirtk "
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| H A D | install.rst | 135 …CMAKE_INSTALL_PREFIX Installation directory (default on Linux and OS X is `/opt/mirtk-<ve…
241 enables auto-completion_ of available MIRTK commands for the ``mirtk`` command.
245 [ ! -f "$MIRTK_ROOT/share/completion/bash/mirtk" ] ||
246 source "$MIRTK_ROOT/share/completion/bash/mirtk"
248 [ ! -f "$MIRTK_ROOT/share/mirtk/completion/bash/mirtk" ] ||
249 source "$MIRTK_ROOT/share/mirtk/completion/bash/mirtk"
255 When the CMAKE_INSTALL_PREFIX contains a directory named "mirtk" (or "mirtk-\<version\>")
256 as in case of the default installation prefix "/opt/mirtk-\<version\>", the library
259 these files are copied into the directory ``$CMAKE_INSTALL_PREFIX/lib/mirtk``.
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| H A D | commands.rst | 19 The following options are common to all ``mirtk`` commands.
21 command :ref:`linked above <CommandsSummary>` or the command help (``mirtk help <command>``).
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| /dports/graphics/mirtk/MIRTK-2.0.0-122-g38210fa/Modules/Transformation/include/mirtk/ |
| H A D | EnergyTerm.h | 31 namespace mirtk {
216 static mirtk::EnergyMeasure ID() { return id; } \
218 virtual mirtk::EnergyMeasure EnergyMeasure() const { return id; } \
224 mirtk::EnergyTerm::Factory().Register(type::ID(), type::NameOfType(), \
225 mirtk::New<mirtk::EnergyTerm, type>)
230 mirtkAutoRegisterObjectTypeMacro(mirtk::EnergyTerm::Factory(), \
231 mirtk::EnergyMeasure, type::ID(), \
232 mirtk::EnergyTerm, type)
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| /dports/graphics/mirtk/MIRTK-2.0.0-122-g38210fa/ |
| H A D | Dockerfile | 10 ## - Push image using "docker push <user>/mirtk:latest"
18 ## https://hub.docker.com/r/biomedia/mirtk/
21 FROM biomedia/ubuntu:18.04-mirtk
43 COPY . /usr/src/mirtk
44 RUN ls /usr/src/mirtk \
47 && mkdir /usr/src/mirtk/Build \
48 && cd /usr/src/mirtk/Build \
84 && rm -rf /usr/src/mirtk \
85 && echo "/usr/local/lib/mirtk" > /etc/ld.so.conf.d/mirtk.conf \
88 # Make "mirtk" the default executable for application containers
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| H A D | README.md | 6 …//images.microbadger.com/badges/image/biomedia/mirtk.svg)](https://microbadger.com/#/images/biomed…
10 …3d1h9lo9pm/branch/master?svg=true)](https://ci.appveyor.com/project/schuhschuh/mirtk/branch/master)
18 See the [online documentation](https://mirtk.github.io/) for more information.
24 See the [installation instructions](https://mirtk.github.io/install.html)
39 the MIRTK license. See the [download page](https://mirtk.github.io/download.html#software-license)
48 See the [publications list](https://mirtk.github.io/publications.html) for suitable citations.
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| /dports/graphics/mirtk/MIRTK-2.0.0-122-g38210fa/Modules/Image/src/ |
| H A D | ImageConfig.cc | 56 namespace mirtk { namespace
98 namespace mirtk { namespace
151 namespace mirtk { namespace
183 namespace mirtk { namespace
215 namespace mirtk { namespace
248 namespace mirtk { namespace
281 namespace mirtk { namespace
307 namespace mirtk { namespace
321 namespace mirtk { namespace
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| /dports/graphics/mirtk/MIRTK-2.0.0-122-g38210fa/Scripts/ |
| H A D | install_mirtk_appimage.sh | 15 See also: http://mirtk.github.io/getstarted.html#install-the-software
35 cp "$APPIMAGE" /tmp/mirtk
37 wget -O /tmp/mirtk https://bintray.com/schuhschuh/AppImages/download_file?file_path=$APPIMAGE
39 curl -o /tmp/mirtk https://bintray.com/schuhschuh/AppImages/download_file?file_path=$APPIMAGE
48 chmod a+x /tmp/mirtk && $SUDO mkdir -p "$INSTALL_PREFIX/bin" && $SUDO cp /tmp/mirtk "$INSTALL_PREFI…
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| H A D | make_appimage.sh | 108 if [ -d usr/lib/mirtk ]; then
109 mv usr/lib/mirtk/* usr/lib/
110 rmdir usr/lib/mirtk
111 sed -i s:lib/mirtk:lib:g usr/bin/mirtk
114 rm -f usr/bin/uninstall-mirtk || true
154 Exec=$PYTHON usr/bin/mirtk
229 > wget -O mirtk "\$URL" && chmod a+x mirtk
230 > ./mirtk -h
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| /dports/graphics/mirtk/MIRTK-2.0.0-122-g38210fa/Modules/Numerics/include/mirtk/ |
| H A D | LocalOptimizer.h | 33 namespace mirtk {
201 mirtk::LocalOptimizer::Factory() \
203 mirtk::New<mirtk::LocalOptimizer, type>)
207 mirtkAutoRegisterObjectTypeMacro(mirtk::LocalOptimizer::Factory(), \
208 mirtk::OptimizationMethod, type::ID(), \
209 mirtk::LocalOptimizer, type)
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| H A D | OptimizationMethod.h | 28 namespace mirtk {
116 struct hash<mirtk::OptimizationMethod> {
117 size_t operator()(const mirtk::OptimizationMethod &enum_value) const {
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| H A D | LineSearch.h | 28 namespace mirtk {
137 virtual mirtk::OptimizationMethod OptimizationMethod() const \
142 virtual mirtk::LineSearchStrategy Strategy() const { return strategy; } \
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| /dports/graphics/mirtk/MIRTK-2.0.0-122-g38210fa/CMake/Modules/ |
| H A D | mirtkGetTargetName.cmake | 25 ## Either prefix target name with "mirtk::" namespace identifier or remove it
29 elseif (TARGET mirtk::${dep})
30 set(${target_name} mirtk::${dep} PARENT_SCOPE)
31 elseif (dep MATCHES "^mirtk::(.*)$" AND TARGET "${CMAKE_MATCH_1}")
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| /dports/graphics/mirtk/MIRTK-2.0.0-122-g38210fa/Applications/tools/ |
| H A D | mirtk.py | 27 import mirtk
90 if mirtk.call([cmd, '-h'], verbose=verbose) != 0:
96 exit_code = mirtk.call(argv, verbose=verbose)
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| /dports/graphics/mirtk/MIRTK-2.0.0-122-g38210fa/Modules/Numerics/test/ |
| H A D | NumericsTest.h | 27 namespace testing { namespace mirtk {
65 EXPECT_PRED_FORMAT2(::testing::mirtk::CmpHelperFloatingPointEQ<double>, \
70 EXPECT_PRED_FORMAT2(::testing::mirtk::CmpHelperFloatingPointEQ<double>, \
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| /dports/graphics/mirtk/MIRTK-2.0.0-122-g38210fa/Modules/Transformation/src/ |
| H A D | FreeFormTransformationIntegration.h | 41 typedef mirtk::FreeFormTransformationIntegration##NAME<FFD> NAME;
46 typedef mirtk::FreeFormTransformationIntegration##METHOD<FFD> NAME;
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| /dports/graphics/mirtk/MIRTK-2.0.0-122-g38210fa/Modules/Common/include/mirtk/ |
| H A D | Event.h | 28 namespace mirtk {
175 struct hash<mirtk::Event> {
176 size_t operator()(const mirtk::Event &enum_value) const {
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| H A D | ObjectFactory.h | 29 namespace mirtk {
144 class base##Factory : public mirtk::ObjectFactory<id_type, base> \
170 (factory).Register(id, type::NameOfType(), mirtk::New<base, type>); \
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| /dports/graphics/mirtk/MIRTK-2.0.0-122-g38210fa/Applications/lib/python/mirtk/ |
| H A D | __init__.py.in | 26 To call a MIRTK command, either use the functions of the mirtk.subprocess module,
27 or simply execute a command using mirtk.<command>(args, option=value).
28 This will invoke the mirtk.subprocess.run function with name=<command> and
36 from mirtk import subprocess
45 from mirtk.subprocess import config, libexec_dir
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| /dports/graphics/mirtk/MIRTK-2.0.0-122-g38210fa/Applications/src/ |
| H A D | extract-image-slice.py | 7 import mirtk
22 mirtk.extract_image_region(args.input, args.output, split='z', **opts)
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| H A D | extract-image-volume.py | 7 import mirtk
22 mirtk.extract_image_region(args.input, args.output, split='t', **opts)
|