| /dports/biology/clustal-omega/clustal-omega-1.2.4/src/hhalign/ |
| H A D | hhmatrices-C.h | 179 …mism, mism, mism, mism, mism, mism, mism, mism, mism, mism, mism, mism, mism, mism, mism, mism, mi…
180 …mism, mism, mism, mism, mism, mism, mism, mism, mism, mism, mism, mism, mism, mism, mism, mism, mi…
181 …mism, mism, mism, mism, mism, mism, mism, mism, mism, mism, mism, mism, mism, mism, mism, mism, mi…
182 …mism, mism, mism, mism, mism, mism, mism, mism, mism, mism, mism, mism, mism, mism, mism, mism, mi…
183 …mism, mism, mism, mism, mism, mism, mism, mism, mism, mism, mism, mism, mism, mism, mism, mism, mi…
184 …mism, mism, mism, mism, mism, mism, mism, mism, mism, mism, mism, mism, mism, mism, mism, mism, mi…
185 …mism, mism, mism, mism, mism, mism, mism, mism, mism, mism, mism, mism, mism, mism, mism, mism, mi…
186 …mism, mism, mism, mism, mism, mism, mism, mism, mism, mism, mism, mism, mism, mism, mism, mism, mi…
187 …mism, mism, mism, mism, mism, mism, mism, mism, mism, mism, mism, mism, mism, mism, mism, mism, mi…
188 …mism, mism, mism, mism, mism, mism, mism, mism, mism, mism, mism, mism, mism, mism, mism, mism, mi…
[all …]
|
| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/app/oligofar/ |
| H A D | cpermutator8b.cpp | 25 int mism = 1 - CBitHacks::BitCount4( s_ncbi2na_ncbi4na_4bases[ncbi2na] & ncbi4na ); in CPermutator8b() local
26 if( mism <= m_maxMism ) { in CPermutator8b()
27 e.push_back( C_Atom( ncbi2na, mism ) ); in CPermutator8b()
41 int mism = 2 - CBitHacks::BitCount4( s_ncbi2na_ncbi4na_4bases[ncbi2na] & ncbi4na ); in CPermutator8b() local
42 if( mism <= m_maxMism ) { in CPermutator8b()
43 e.push_back( C_Atom( ncbi2na, mism ) ); in CPermutator8b()
58 int mism = 3 - CBitHacks::BitCount4( s_ncbi2na_ncbi4na_4bases[ncbi2na] & ncbi4na ); in CPermutator8b() local
59 if( mism <= m_maxMism ) { in CPermutator8b()
60 e.push_back( C_Atom( ncbi2na, mism ) ); in CPermutator8b()
77 if( mism <= m_maxMism ) { in CPermutator8b()
[all …]
|
| H A D | chashpopulator.hpp | 61 void operator() ( Uint8 hash, int mism, int amb );
162 inline void CHashPopulator::operator () ( Uint8 hash, int mism, int amb ) in operator ()() argument
167 CHashAtom a(m_query, m_flags, m_stride + m_offset, mism, m_gaps, m_gapType ); in operator ()()
172 …CHashAtom a0( m_query, m_flags | CHashAtom::fFlag_wordId0, m_stride + m_offset, mism, m_gaps, m_ga… in operator ()()
173 …CHashAtom a1( m_query, m_flags | CHashAtom::fFlag_wordId1, m_stride + m_offset, mism, m_gaps, m_ga… in operator ()()
|
| H A D | cscancallback.hpp | 15 void operator () ( const Uint8& hash, Uint4 mism, unsigned amb ) { in operator ()() argument
16 m_mism = mism; in operator ()()
|
| H A D | chashatom.hpp | 51 int mism = 0, in CHashAtom() argument
55 m_gapIsInsertion( t & 1 & (gaps > 0) ), m_mismCnt( mism ), m_gapsCnt( gaps ), in CHashAtom()
|
| H A D | coligofarapp-tests.cpp | 12 void operator () ( Uint8 hash, int mism, Uint8 alt ) { ++m_count; } in operator ()() argument
|
| H A D | csamalignments.cpp | 279 string mism = ""; in ParseSamLine() local
284 if( fields[i].substr( 0, 5 ) == "MD:Z:" ) mism = fields[i].substr( 5 ); in ParseSamLine()
293 TTrVector fullcigar = GetFullCigar( cigar, mism ); in ParseSamLine()
302 if( mism == "" && ((al + pl + sl - 1) == ql)) { in ParseSamLine()
|
| H A D | cqueryhash.hpp | 154 void operator () ( Uint8 hash, int mism, unsigned amb ) const;
|
| /dports/astro/pykep/pykep-2.6/src/sims_flanagan/ |
| H A D | leg.cpp | 80 sc_state mism; in operator <<() local
82 in.get_mismatch_con(mism); in operator <<()
84 … s << mism.get_position() << " " << mism.get_velocity() << " " << mism.get_mass() << std::endl; in operator <<()
|
| /dports/astro/py-pykep/pykep-2.6/src/sims_flanagan/ |
| H A D | leg.cpp | 80 sc_state mism; in operator <<() local
82 in.get_mismatch_con(mism); in operator <<()
84 … s << mism.get_position() << " " << mism.get_velocity() << " " << mism.get_mass() << std::endl; in operator <<()
|
| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/gnomon/ |
| H A D | gnomon_seq.cpp | 408 m_edited_ranges.push_back(SMapRange(edited_from, edited_to, mism)); in InsertOneToOneRange()
422 string mism; in InsertIndelRangesForInterval() local
435 for( ; fsi != fsi_end && fsi->IsMismatch() && fsi->Loc() == orig_a+(int)mism.size(); ++fsi) in InsertIndelRangesForInterval()
436 mism += fsi->GetInDelV(); in InsertIndelRangesForInterval()
439 int len = (mism.empty() ? fsi->Loc()-orig_a : mism.size()); in InsertIndelRangesForInterval()
471 mism.clear(); in InsertIndelRangesForInterval()
472 for( ; fsi != fsi_end && fsi->IsMismatch() && fsi->Loc() == orig_a+(int)mism.size(); ++fsi) in InsertIndelRangesForInterval()
473 mism += fsi->GetInDelV(); in InsertIndelRangesForInterval()
476 if(!mism.empty()) { in InsertIndelRangesForInterval()
477 int len = mism.size(); in InsertIndelRangesForInterval()
[all …]
|
| /dports/graphics/opencollada/OpenCOLLADA-1.6.68/Externals/MayaDataModel/include/ |
| H A D | MayaDMShadingEngine.h | 47 void setMiExportVolumeSampler(bool mism) in setMiExportVolumeSampler() argument
49 if(mism == false) return; in setMiExportVolumeSampler()
50 fprintf(mFile,"\tsetAttr \".mism\" %i;\n", mism); in setMiExportVolumeSampler()
|
| /dports/biology/py-cutadapt/cutadapt-3.3/tests/cut/ |
| H A D | wildcardN.fa | 5 >1mism
|
| /dports/biology/py-cutadapt/cutadapt-3.3/tests/data/ |
| H A D | wildcardN.fa | 5 >1mism
|
| /dports/biology/prodigal/Prodigal-2.6.3-7-ga78ed3f/ |
| H A D | sequence.c | 662 int i, j, k, mism, rdis, limit, max_val, cur_val = 0; in shine_dalgarno_exact() local
681 mism = 0; in shine_dalgarno_exact()
684 if(match[k] < 0.0) mism++; in shine_dalgarno_exact()
686 if(mism > 0) continue; in shine_dalgarno_exact()
738 int i, j, k, mism, rdis, limit, max_val, cur_val = 0; in shine_dalgarno_mm() local
762 mism = 0; in shine_dalgarno_mm()
765 if(match[k] < 0.0) mism++; in shine_dalgarno_mm()
768 if(mism != 1) continue; in shine_dalgarno_mm()
|
| /dports/www/py-protego/Protego-0.1.16/tests/test_data/ |
| H A D | www.iust.ac.ir | 46 Disallow: /mism.php
99 Disallow: /mism.php*
|
| H A D | aut.ac.ir | 46 Disallow: /mism.php
99 Disallow: /mism.php*
|
| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/algo/gnomon/ |
| H A D | gnomon_model.hpp | 684 …(SMapRangeEdge from, SMapRangeEdge to, const string& mism) : m_from(from), m_to(to), m_mism_seq(mi… in SMapRange() argument
724 …gnedSeqPos orig_start, TSignedSeqPos edited_start, int len, const string& mism, int left_orige, in…
|
| /dports/science/quantum-espresso/q-e-qe-6.7.0/CPV/src/ |
| H A D | dforceb.f90 | 60 integer j,k,ig,iv,jv,ix,jx,is,ia, iss,iss1,mism local
|
| /dports/biology/vcftools/vcftools-0.1.16/src/perl/ |
| H A D | Vcf.pm | 3258 my $mism = 0;
3261 if ( substr($ref,$i,1) ne substr($allele,$i,1) ) { $mism++; }
3263 if ( $mism==0 ) { $type='r'; $len=0; }
3264 else { $type='s'; $len=$mism; }
|
| /dports/biology/p5-AcePerl/AcePerl-1.92/acebrowser/htdocs/stylesheets/ |
| H A D | aceperl.css | 103 .mism { color: #000000;
|
| /dports/games/hyperrogue/hyperrogue-12.0f/ |
| H A D | rulegen.cpp | 597 void extend_analyzer(twalker cw_target, int dir, int id, int mism, twalker rg) { in extend_analyzer() argument
628 if(mism == 0 && !added) in extend_analyzer()
|
| /dports/biology/viennarna/ViennaRNA-2.4.18/doc/latex/ |
| H A D | 1_88_84__epars_8h_source.tex | 174 \DoxyCodeLine{00206 PRIVATE \textcolor{keywordtype}{int} mism\_H\_184[\mbox{\hyperlink{constants_8h…
|
| /dports/mail/spambnc/usr/local/sb/grey/ |
| H A D | language-patterns.rc | 528 * 200^1 (^|[^0-9a-z])mism(o|os|a|as)([^0-9a-z]|$)
|
| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/app/oligofar/man/ |
| H A D | oligofar.tex | 407 \item[\OptArg{--max-mismatch}{=mism}~~\OptArg{-n}{~mism}]
|