Searched refs:mismatch_bases (Results 1 – 1 of 1) sorted by relevance
3311 int mismatch_bases = 0; in finalise_explain_CIGAR() local3340 …negative != ((result->result_flags & CORE_IS_NEGATIVE_STRAND)?1:0), &mismatch_bases, result -> con… in finalise_explain_CIGAR()3357 … explain_context -> read_name, outpos1 , final_position , tmp_cigar, mismatch_bases, non_clipped_l… in finalise_explain_CIGAR()3362 …if(mismatch_bases <= applied_mismatch && is_exonic_read_fraction_OK && fusions_in_read < 2 ){// &&… in finalise_explain_CIGAR()3373 … if(mismatch_bases > applied_mismatch ) realign_res -> realign_flags |= CORE_TOO_MANY_MISMATCHES; in finalise_explain_CIGAR()3426 realign_res -> final_mismatched_bases = mismatch_bases; in finalise_explain_CIGAR()