Searched refs:mismatchesAfter (Results 1 – 1 of 1) sorted by relevance
400 int mismatchesAfter = countMismatches(alignment, referenceSequence); in stablyLeftAlign() local402 if (mismatchesBefore != mismatchesAfter) { in stablyLeftAlign()404 …"ERROR: found " << mismatchesBefore << " mismatches before, but " << mismatchesAfter << " after le… in stablyLeftAlign()