Searched refs:mismatchesBefore (Results 1 – 1 of 1) sorted by relevance
387 int mismatchesBefore = countMismatches(alignment, referenceSequence); in stablyLeftAlign() local402 if (mismatchesBefore != mismatchesAfter) { in stablyLeftAlign()404 …cerr << "ERROR: found " << mismatchesBefore << " mismatches before, but " << mismatchesAfter << " … in stablyLeftAlign()