| /dports/biology/ugene/ugene-40.1/src/libs_3rdparty/samtools/src/samtools/ |
| H A D | bam_plcmd.c | 99 } mplp_aux_t; typedef
132 mplp_aux_t *ma = (mplp_aux_t*)data; in mplp_func()
202 mplp_aux_t **data; in mpileup()
223 data = (mplp_aux_t **)calloc(n, sizeof(void*)); in mpileup()
231 data[i] = (mplp_aux_t *)calloc(1, sizeof(mplp_aux_t)); in mpileup()
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| /dports/biology/bcftools/bcftools-1.14/ |
| H A D | mpileup.c | 65 typedef struct _mplp_aux_t mplp_aux_t; typedef
89 mplp_aux_t **mplp_data;
130 static int mplp_get_ref(mplp_aux_t *ma, int tid, char **ref, int *ref_len) { in mplp_get_ref()
190 mplp_aux_t *ma = (mplp_aux_t*)data; in mplp_func()
302 mplp_aux_t *ma = (mplp_aux_t *)data; in pileup_constructor()
600 conf->mplp_data = (mplp_aux_t**) calloc(conf->nfiles, sizeof(mplp_aux_t*)); in mpileup()
638 conf->mplp_data[i] = (mplp_aux_t*) calloc(1, sizeof(mplp_aux_t)); in mpileup()
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| /dports/biology/bio-mocha/bcftools-1.14/ |
| H A D | mpileup.c | 65 typedef struct _mplp_aux_t mplp_aux_t; typedef
89 mplp_aux_t **mplp_data;
130 static int mplp_get_ref(mplp_aux_t *ma, int tid, char **ref, int *ref_len) { in mplp_get_ref()
190 mplp_aux_t *ma = (mplp_aux_t*)data; in mplp_func()
302 mplp_aux_t *ma = (mplp_aux_t *)data; in pileup_constructor()
600 conf->mplp_data = (mplp_aux_t**) calloc(conf->nfiles, sizeof(mplp_aux_t*)); in mpileup()
638 conf->mplp_data[i] = (mplp_aux_t*) calloc(1, sizeof(mplp_aux_t)); in mpileup()
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| /dports/biology/py-pysam/pysam-0.18.0/bcftools/ |
| H A D | mpileup.c | 65 typedef struct _mplp_aux_t mplp_aux_t; typedef
89 mplp_aux_t **mplp_data;
130 static int mplp_get_ref(mplp_aux_t *ma, int tid, char **ref, int *ref_len) { in mplp_get_ref()
190 mplp_aux_t *ma = (mplp_aux_t*)data; in mplp_func()
302 mplp_aux_t *ma = (mplp_aux_t *)data; in pileup_constructor()
600 conf->mplp_data = (mplp_aux_t**) calloc(conf->nfiles, sizeof(mplp_aux_t*)); in mpileup()
638 conf->mplp_data[i] = (mplp_aux_t*) calloc(1, sizeof(mplp_aux_t)); in mpileup()
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| H A D | mpileup.c.pysam.c | 67 typedef struct _mplp_aux_t mplp_aux_t; typedef
91 mplp_aux_t **mplp_data;
132 static int mplp_get_ref(mplp_aux_t *ma, int tid, char **ref, int *ref_len) { in mplp_get_ref()
192 mplp_aux_t *ma = (mplp_aux_t*)data; in mplp_func()
304 mplp_aux_t *ma = (mplp_aux_t *)data; in pileup_constructor()
602 conf->mplp_data = (mplp_aux_t**) calloc(conf->nfiles, sizeof(mplp_aux_t*)); in mpileup()
640 conf->mplp_data[i] = (mplp_aux_t*) calloc(1, sizeof(mplp_aux_t)); in mpileup()
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| /dports/biology/stringtie/stringtie-2.1.1/samtools-0.1.18/ |
| H A D | bam_plcmd.c | 98 } mplp_aux_t; typedef
111 mplp_aux_t *ma = (mplp_aux_t*)data; in mplp_func()
181 mplp_aux_t **data; in mpileup()
210 data[i] = calloc(1, sizeof(mplp_aux_t)); in mpileup()
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| /dports/biology/py-pysam/pysam-0.18.0/samtools/ |
| H A D | bam_plcmd.c | 229 } mplp_aux_t; typedef
284 static int mplp_get_ref(mplp_aux_t *ma, int tid, char **ref, hts_pos_t *ref_len) { in mplp_get_ref()
385 mplp_aux_t *ma = (mplp_aux_t*)data; in mplp_func()
480 mplp_aux_t **data; in mpileup()
504 data = calloc(n, sizeof(mplp_aux_t*)); in mpileup()
518 data[i] = calloc(1, sizeof(mplp_aux_t)); in mpileup()
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| H A D | bam_plcmd.c.pysam.c | 231 } mplp_aux_t; typedef
286 static int mplp_get_ref(mplp_aux_t *ma, int tid, char **ref, hts_pos_t *ref_len) { in mplp_get_ref()
387 mplp_aux_t *ma = (mplp_aux_t*)data; in mplp_func()
482 mplp_aux_t **data; in mpileup()
506 data = calloc(n, sizeof(mplp_aux_t*)); in mpileup()
520 data[i] = calloc(1, sizeof(mplp_aux_t)); in mpileup()
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| /dports/biology/samtools/samtools-1.14/ |
| H A D | bam_plcmd.c | 229 } mplp_aux_t; typedef
284 static int mplp_get_ref(mplp_aux_t *ma, int tid, char **ref, hts_pos_t *ref_len) { in mplp_get_ref()
385 mplp_aux_t *ma = (mplp_aux_t*)data; in mplp_func()
480 mplp_aux_t **data; in mpileup()
504 data = calloc(n, sizeof(mplp_aux_t*)); in mpileup()
518 data[i] = calloc(1, sizeof(mplp_aux_t)); in mpileup()
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| /dports/biology/seqan1/seqan-1.3.1/lib/samtools/ |
| H A D | bam_plcmd.c | 550 } mplp_aux_t; typedef
563 mplp_aux_t *ma = (mplp_aux_t*)data; in mplp_func()
610 mplp_aux_t **data; in mpileup()
640 data[i] = calloc(1, sizeof(mplp_aux_t)); in mpileup()
|