| /dports/biology/ugene/ugene-40.1/src/libs_3rdparty/samtools/src/samtools/ |
| H A D | bam_plcmd.c | 90 } mplp_conf_t; typedef
98 const mplp_conf_t *conf;
198 static int mpileup(mplp_conf_t *conf, int n, char **fn, const char* bcfOut, UGENE_mpileup_settings*… in mpileup()
468 mplp_conf_t mplp; in bam_mpileup()
469 memset(&mplp, 0, sizeof(mplp_conf_t)); in bam_mpileup()
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| /dports/biology/stringtie/stringtie-2.1.1/samtools-0.1.18/ |
| H A D | bam_plcmd.c | 89 } mplp_conf_t; typedef
97 const mplp_conf_t *conf;
177 static int mpileup(mplp_conf_t *conf, int n, char **fn) in mpileup()
438 mplp_conf_t mplp; in bam_mpileup()
439 memset(&mplp, 0, sizeof(mplp_conf_t)); in bam_mpileup()
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| /dports/biology/bcftools/bcftools-1.14/ |
| H A D | mpileup.c | 102 } mplp_conf_t; typedef
118 const mplp_conf_t *conf;
367 static void flush_bcf_records(mplp_conf_t *conf, htsFile *fp, bcf_hdr_t *hdr, bcf1_t *rec) in flush_bcf_records()
536 static int mpileup_reg(mplp_conf_t *conf, uint32_t beg, uint32_t end) in mpileup_reg()
591 static int mpileup(mplp_conf_t *conf) in mpileup()
1088 static void print_usage(FILE *fp, const mplp_conf_t *mplp) in print_usage()
1197 mplp_conf_t mplp; in main_mpileup()
1198 memset(&mplp, 0, sizeof(mplp_conf_t)); in main_mpileup()
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| /dports/biology/bio-mocha/bcftools-1.14/ |
| H A D | mpileup.c | 102 } mplp_conf_t; typedef
118 const mplp_conf_t *conf;
367 static void flush_bcf_records(mplp_conf_t *conf, htsFile *fp, bcf_hdr_t *hdr, bcf1_t *rec) in flush_bcf_records()
536 static int mpileup_reg(mplp_conf_t *conf, uint32_t beg, uint32_t end) in mpileup_reg()
591 static int mpileup(mplp_conf_t *conf) in mpileup()
1088 static void print_usage(FILE *fp, const mplp_conf_t *mplp) in print_usage()
1197 mplp_conf_t mplp; in main_mpileup()
1198 memset(&mplp, 0, sizeof(mplp_conf_t)); in main_mpileup()
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| /dports/biology/py-pysam/pysam-0.18.0/bcftools/ |
| H A D | mpileup.c | 102 } mplp_conf_t; typedef
118 const mplp_conf_t *conf;
367 static void flush_bcf_records(mplp_conf_t *conf, htsFile *fp, bcf_hdr_t *hdr, bcf1_t *rec) in flush_bcf_records()
536 static int mpileup_reg(mplp_conf_t *conf, uint32_t beg, uint32_t end) in mpileup_reg()
591 static int mpileup(mplp_conf_t *conf) in mpileup()
1088 static void print_usage(FILE *fp, const mplp_conf_t *mplp) in print_usage()
1197 mplp_conf_t mplp; in main_mpileup()
1198 memset(&mplp, 0, sizeof(mplp_conf_t)); in main_mpileup()
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| H A D | mpileup.c.pysam.c | 104 } mplp_conf_t; typedef
120 const mplp_conf_t *conf;
369 static void flush_bcf_records(mplp_conf_t *conf, htsFile *fp, bcf_hdr_t *hdr, bcf1_t *rec) in flush_bcf_records()
538 static int mpileup_reg(mplp_conf_t *conf, uint32_t beg, uint32_t end) in mpileup_reg()
593 static int mpileup(mplp_conf_t *conf) in mpileup()
1090 static void print_usage(FILE *fp, const mplp_conf_t *mplp) in print_usage()
1199 mplp_conf_t mplp; in main_mpileup()
1200 memset(&mplp, 0, sizeof(mplp_conf_t)); in main_mpileup()
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| /dports/biology/py-pysam/pysam-0.18.0/samtools/ |
| H A D | bam_plcmd.c | 213 } mplp_conf_t; typedef
228 const mplp_conf_t *conf;
237 static int build_auxlist(mplp_conf_t *conf, char *optstring) { in build_auxlist()
360 print_empty_pileup(FILE *fp, const mplp_conf_t *conf, const char *tname, in print_empty_pileup()
476 static int mpileup(mplp_conf_t *conf, int n, char **fn, char **fn_idx) in mpileup()
1175 static void print_usage(FILE *fp, const mplp_conf_t *mplp) in print_usage()
1256 mplp_conf_t mplp; in bam_mpileup()
1257 memset(&mplp, 0, sizeof(mplp_conf_t)); in bam_mpileup()
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| H A D | bam_plcmd.c.pysam.c | 215 } mplp_conf_t; typedef
230 const mplp_conf_t *conf;
239 static int build_auxlist(mplp_conf_t *conf, char *optstring) { in build_auxlist()
362 print_empty_pileup(FILE *fp, const mplp_conf_t *conf, const char *tname, in print_empty_pileup()
478 static int mpileup(mplp_conf_t *conf, int n, char **fn, char **fn_idx) in mpileup()
1177 static void print_usage(FILE *fp, const mplp_conf_t *mplp) in print_usage()
1258 mplp_conf_t mplp; in bam_mpileup()
1259 memset(&mplp, 0, sizeof(mplp_conf_t)); in bam_mpileup()
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| /dports/biology/samtools/samtools-1.14/ |
| H A D | bam_plcmd.c | 213 } mplp_conf_t; typedef
228 const mplp_conf_t *conf;
237 static int build_auxlist(mplp_conf_t *conf, char *optstring) { in build_auxlist()
360 print_empty_pileup(FILE *fp, const mplp_conf_t *conf, const char *tname, in print_empty_pileup()
476 static int mpileup(mplp_conf_t *conf, int n, char **fn, char **fn_idx) in mpileup()
1175 static void print_usage(FILE *fp, const mplp_conf_t *mplp) in print_usage()
1256 mplp_conf_t mplp; in bam_mpileup()
1257 memset(&mplp, 0, sizeof(mplp_conf_t)); in bam_mpileup()
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| /dports/biology/seqan1/seqan-1.3.1/lib/samtools/ |
| H A D | bam_plcmd.c | 543 } mplp_conf_t; typedef
606 static int mpileup(mplp_conf_t *conf, int n, char **fn) in mpileup()
854 mplp_conf_t mplp; in bam_mpileup()
855 memset(&mplp, 0, sizeof(mplp_conf_t)); in bam_mpileup()
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