Searched refs:msaRows (Results 1 – 6 of 6) sorted by relevance
79 QList<MultipleAlignmentRow> convertToMaRows(const QList<MultipleSequenceAlignmentRow> &msaRows) { in convertToMaRows() argument81 foreach (const MultipleSequenceAlignmentRow &msaRow, msaRows) { in convertToMaRows()332 void MultipleSequenceAlignmentData::setRows(const QList<MultipleSequenceAlignmentRow> &msaRows) { in setRows() argument333 rows = convertToMaRows(msaRows); in setRows()557 QList<MultipleSequenceAlignmentRow> msaRows; in getMsaRows() local559 msaRows << maRow.dynamicCast<MultipleSequenceAlignmentRow>(); in getMsaRows()561 return msaRows; in getMsaRows()
241 void setRows(const QList<MultipleSequenceAlignmentRow> &msaRows);
83 QList<MultipleSequenceAlignmentRow> msaRows = curObj->getMsa()->getMsaRows(); in extractSequencesFromObjects() local84 for (const MultipleSequenceAlignmentRow &row : qAsConst(msaRows)) { in extractSequencesFromObjects()
827 static QList<QList<int>> groupRowsBySimilarity(const QList<MultipleAlignmentRow> &msaRows) { in groupRowsBySimilarity() argument830 for (int i = 0; i < msaRows.size(); i++) { in groupRowsBySimilarity()834 const MultipleAlignmentRow &row = msaRows[i]; in groupRowsBySimilarity()837 for (int j = i + 1; j < msaRows.size(); j++) { in groupRowsBySimilarity()838 const MultipleAlignmentRow &next = msaRows[j]; in groupRowsBySimilarity()
197 const QList<U2MsaRow> msaRows = msaDbi->getRows(mcaRef.entityId, os); in getMcaRows() local200 foreach (const U2MsaRow &msaRow, msaRows) { in getMcaRows()
553 QList<U2MsaRow> msaRows; in addRowsToMsa() local