Home
last modified time | relevance | path

Searched refs:mtmpi (Results 1 – 19 of 19) sorted by relevance

/dports/biology/bcftools/bcftools-1.14/plugins/
H A Dgvcfz.c77 int32_t *tmpi, mtmpi, mean_min_dp_reported; member
249 int ret = bcf_get_info_int32(args->hdr_in,rec,"END",&args->tmpi,&args->mtmpi); in process_gvcf()
253 ret = bcf_get_format_int32(args->hdr_in,rec,gq_key,&args->tmpi,&args->mtmpi); in process_gvcf()
257 if ( ret<1 ) ret = bcf_get_format_int32(args->hdr_in,rec,gq_key,&args->tmpi,&args->mtmpi); in process_gvcf()
263 if ( bcf_get_format_int32(args->hdr_in,rec,"MIN_DP",&args->tmpi,&args->mtmpi)==1 ) in process_gvcf()
265 else if ( bcf_get_format_int32(args->hdr_in,rec,"DP",&args->tmpi,&args->mtmpi)==1 ) in process_gvcf()
271 ret = bcf_get_format_int32(args->hdr_in,rec,"PL",&args->tmpi,&args->mtmpi); in process_gvcf()
/dports/biology/bio-mocha/bcftools-1.14/plugins/
H A Dgvcfz.c77 int32_t *tmpi, mtmpi, mean_min_dp_reported; member
249 int ret = bcf_get_info_int32(args->hdr_in,rec,"END",&args->tmpi,&args->mtmpi); in process_gvcf()
253 ret = bcf_get_format_int32(args->hdr_in,rec,gq_key,&args->tmpi,&args->mtmpi); in process_gvcf()
257 if ( ret<1 ) ret = bcf_get_format_int32(args->hdr_in,rec,gq_key,&args->tmpi,&args->mtmpi); in process_gvcf()
263 if ( bcf_get_format_int32(args->hdr_in,rec,"MIN_DP",&args->tmpi,&args->mtmpi)==1 ) in process_gvcf()
265 else if ( bcf_get_format_int32(args->hdr_in,rec,"DP",&args->tmpi,&args->mtmpi)==1 ) in process_gvcf()
271 ret = bcf_get_format_int32(args->hdr_in,rec,"PL",&args->tmpi,&args->mtmpi); in process_gvcf()
/dports/biology/bio-mocha/bcftools-1.14/
H A Dvcfannotate.c152 int mtmpi, mtmpf, mtmps; member
530 hts_expand(int,1,args->mtmpi,args->tmpi); in setter_filter()
568 hts_expand(int,rec->d.n_flt,args->mtmpi,args->tmpi); in vcf_setter_filter()
771 ntmpi = bcf_get_info_int32(args->hdr, line, col->hdr_key_dst, &args->tmpi, &args->mtmpi); in setter_info_int()
790 hts_expand(int32_t,ntmpi,args->mtmpi,args->tmpi); in setter_info_int()
845 hts_expand(int32_t,ntmpi,args->mtmpi,args->tmpi); in setter_info_int()
852 hts_expand(int32_t,ntmpi,args->mtmpi,args->tmpi); in setter_info_int()
1277 int nsrc = bcf_get_genotypes(args->files->readers[1].header,rec,&args->tmpi,&args->mtmpi); in vcf_setter_format_gt()
1562 hts_expand(int32_t,nvals*args->nsmpl_annot,args->mtmpi,args->tmpi); in setter_format_int()
1933 hts_expand(int32_t,ndst,args->mtmpi,args->tmpi); in vcf_setter_format_str()
[all …]
H A Dabuf.c75 int ngt, mgt, ntmpi, mtmpi, mtmp, mtmp2; member
446 hts_expand(int32_t,buf->ngt,buf->mtmpi,buf->tmpi); in _split_table_set_gt()
H A Dfilter.c102 int max_unpack, mtmpi, mtmpf, nsamples; member
565 tok->nvalues = bcf_get_info_int32(flt->hdr,line,tok->tag,&flt->tmpi,&flt->mtmpi); in filters_set_info_int()
699 if ( (nvals=bcf_get_format_int32(flt->hdr,line,tok->tag,&flt->tmpi,&flt->mtmpi))<0 ) in filters_set_format_int()
1113 hts_expand(int32_t, line->n_allele, flt->mtmpi, flt->tmpi); in filters_set_ac()
1765 int ngt = bcf_get_genotypes(flt->hdr, line, &flt->tmpi, &flt->mtmpi); in func_binom()
/dports/biology/bcftools/bcftools-1.14/
H A Dvcfannotate.c152 int mtmpi, mtmpf, mtmps; member
530 hts_expand(int,1,args->mtmpi,args->tmpi); in setter_filter()
568 hts_expand(int,rec->d.n_flt,args->mtmpi,args->tmpi); in vcf_setter_filter()
771 ntmpi = bcf_get_info_int32(args->hdr, line, col->hdr_key_dst, &args->tmpi, &args->mtmpi); in setter_info_int()
790 hts_expand(int32_t,ntmpi,args->mtmpi,args->tmpi); in setter_info_int()
845 hts_expand(int32_t,ntmpi,args->mtmpi,args->tmpi); in setter_info_int()
852 hts_expand(int32_t,ntmpi,args->mtmpi,args->tmpi); in setter_info_int()
1277 int nsrc = bcf_get_genotypes(args->files->readers[1].header,rec,&args->tmpi,&args->mtmpi); in vcf_setter_format_gt()
1562 hts_expand(int32_t,nvals*args->nsmpl_annot,args->mtmpi,args->tmpi); in setter_format_int()
1933 hts_expand(int32_t,ndst,args->mtmpi,args->tmpi); in vcf_setter_format_str()
[all …]
H A Dabuf.c75 int ngt, mgt, ntmpi, mtmpi, mtmp, mtmp2; member
446 hts_expand(int32_t,buf->ngt,buf->mtmpi,buf->tmpi); in _split_table_set_gt()
H A Dfilter.c102 int max_unpack, mtmpi, mtmpf, nsamples; member
565 tok->nvalues = bcf_get_info_int32(flt->hdr,line,tok->tag,&flt->tmpi,&flt->mtmpi); in filters_set_info_int()
699 if ( (nvals=bcf_get_format_int32(flt->hdr,line,tok->tag,&flt->tmpi,&flt->mtmpi))<0 ) in filters_set_format_int()
1113 hts_expand(int32_t, line->n_allele, flt->mtmpi, flt->tmpi); in filters_set_ac()
1765 int ngt = bcf_get_genotypes(flt->hdr, line, &flt->tmpi, &flt->mtmpi); in func_binom()
/dports/biology/py-pysam/pysam-0.18.0/bcftools/
H A Dvcfannotate.c152 int mtmpi, mtmpf, mtmps; member
530 hts_expand(int,1,args->mtmpi,args->tmpi); in setter_filter()
568 hts_expand(int,rec->d.n_flt,args->mtmpi,args->tmpi); in vcf_setter_filter()
771 ntmpi = bcf_get_info_int32(args->hdr, line, col->hdr_key_dst, &args->tmpi, &args->mtmpi); in setter_info_int()
790 hts_expand(int32_t,ntmpi,args->mtmpi,args->tmpi); in setter_info_int()
845 hts_expand(int32_t,ntmpi,args->mtmpi,args->tmpi); in setter_info_int()
852 hts_expand(int32_t,ntmpi,args->mtmpi,args->tmpi); in setter_info_int()
1277 int nsrc = bcf_get_genotypes(args->files->readers[1].header,rec,&args->tmpi,&args->mtmpi); in vcf_setter_format_gt()
1562 hts_expand(int32_t,nvals*args->nsmpl_annot,args->mtmpi,args->tmpi); in setter_format_int()
1933 hts_expand(int32_t,ndst,args->mtmpi,args->tmpi); in vcf_setter_format_str()
[all …]
H A Dvcfannotate.c.pysam.c154 int mtmpi, mtmpf, mtmps; member
532 hts_expand(int,1,args->mtmpi,args->tmpi); in setter_filter()
570 hts_expand(int,rec->d.n_flt,args->mtmpi,args->tmpi); in vcf_setter_filter()
773 ntmpi = bcf_get_info_int32(args->hdr, line, col->hdr_key_dst, &args->tmpi, &args->mtmpi); in setter_info_int()
792 hts_expand(int32_t,ntmpi,args->mtmpi,args->tmpi); in setter_info_int()
847 hts_expand(int32_t,ntmpi,args->mtmpi,args->tmpi); in setter_info_int()
854 hts_expand(int32_t,ntmpi,args->mtmpi,args->tmpi); in setter_info_int()
1279 int nsrc = bcf_get_genotypes(args->files->readers[1].header,rec,&args->tmpi,&args->mtmpi); in vcf_setter_format_gt()
1564 hts_expand(int32_t,nvals*args->nsmpl_annot,args->mtmpi,args->tmpi); in setter_format_int()
1935 hts_expand(int32_t,ndst,args->mtmpi,args->tmpi); in vcf_setter_format_str()
[all …]
H A Dabuf.c75 int ngt, mgt, ntmpi, mtmpi, mtmp, mtmp2; member
446 hts_expand(int32_t,buf->ngt,buf->mtmpi,buf->tmpi); in _split_table_set_gt()
H A Dabuf.c.pysam.c77 int ngt, mgt, ntmpi, mtmpi, mtmp, mtmp2; member
448 hts_expand(int32_t,buf->ngt,buf->mtmpi,buf->tmpi); in _split_table_set_gt()
H A Dfilter.c102 int max_unpack, mtmpi, mtmpf, nsamples; member
565 tok->nvalues = bcf_get_info_int32(flt->hdr,line,tok->tag,&flt->tmpi,&flt->mtmpi); in filters_set_info_int()
699 if ( (nvals=bcf_get_format_int32(flt->hdr,line,tok->tag,&flt->tmpi,&flt->mtmpi))<0 ) in filters_set_format_int()
1113 hts_expand(int32_t, line->n_allele, flt->mtmpi, flt->tmpi); in filters_set_ac()
1765 int ngt = bcf_get_genotypes(flt->hdr, line, &flt->tmpi, &flt->mtmpi); in func_binom()
H A Dfilter.c.pysam.c104 int max_unpack, mtmpi, mtmpf, nsamples; member
567 tok->nvalues = bcf_get_info_int32(flt->hdr,line,tok->tag,&flt->tmpi,&flt->mtmpi); in filters_set_info_int()
701 if ( (nvals=bcf_get_format_int32(flt->hdr,line,tok->tag,&flt->tmpi,&flt->mtmpi))<0 ) in filters_set_format_int()
1115 hts_expand(int32_t, line->n_allele, flt->mtmpi, flt->tmpi); in filters_set_ac()
1767 int ngt = bcf_get_genotypes(flt->hdr, line, &flt->tmpi, &flt->mtmpi); in func_binom()
/dports/science/mpqc/mpqc-2.3.1/src/bin/mpqc/
H A Dmpqcrun.dox53 <dt>grp=<tt>mtmpi</tt><dd>Use multi-threaded MPI.
/dports/science/mpqc/mpqc-2.3.1/
H A Dconfigure.in156 [ --with-default-parallel Default parallism model: none, mpi, armcimpi or mtmpi],
161 elif test $DEFAULT_PARALLEL = mtmpi; then
1207 if test $DEFAULT_PARALLEL = mtmpi -a X$HAVE_MPI != Xyes; then
1208 AC_MSG_ERROR([--with-default-parallel=mtmpi but MPI not available])
H A DCHANGES109 + --with-default-parallel={mpi2,mtmpi}
H A Dconfigure1047 --with-default-parallel Default parallism model: none, mpi, armcimpi or mtmpi
9599 if test $DEFAULT_PARALLEL = mtmpi -a X$HAVE_MPI != Xyes; then
/dports/science/mpqc/mpqc-2.3.1/doc/
H A Dcompile.dox167 specializations. Can be <tt>none</tt> for no default or <tt>mtmpi</tt>