Searched refs:my_non_clipped_length (Results 1 – 1 of 1) sorted by relevance
3068 int my_non_clipped_length = read_len; in final_CIGAR_quality() local3069 my_non_clipped_length -= max(0,tail_soft_clipped); in final_CIGAR_quality()3070 my_non_clipped_length -= max(0,head_soft_clipped); in final_CIGAR_quality()3075 …if(is_wrong_cigar || rebuilt_read_len != read_len || my_non_clipped_length < global_context->confi… in final_CIGAR_quality()3138 (*non_clipped_length) = my_non_clipped_length; in final_CIGAR_quality()3139 (*matched_bases) = my_non_clipped_length - all_mismatched - total_insertion_length; in final_CIGAR_quality()3142 return max(0, (int)(all_matched_bases*60/my_non_clipped_length)); in final_CIGAR_quality()