Home
last modified time | relevance | path

Searched refs:nExIters (Results 1 – 10 of 10) sorted by relevance

/dports/biology/bowtie2/bowtie2-2.4.4/
H A Dread.h345 nExIters = in reset()
375 uint64_t nExIters; // iterations of seed hit extend loop member
H A Dsam.cpp525 itoa10<uint64_t>(prm.nExIters, buf); in printAlignedOptFlags()
880 itoa10<uint64_t>(prm.nExIters, buf); in printEmptyOptFlags()
H A Daligner_sw_driver.cpp918 if(prm.nExIters >= maxIters) { in extendSeeds()
921 prm.nExIters++; in extendSeeds()
1604 if(prm.nExIters >= maxIters) { in extendSeedsPaired()
1622 prm.nExIters++; in extendSeedsPaired()
H A Dbt2_search.cpp4055 assert_leq(prm.nExIters, mxIter[i]); in multiseedSearchWorker()
/dports/biology/bowtie/bowtie-1.3.1/
H A Dread.h350 nExIters = in reset()
380 uint64_t nExIters; // iterations of seed hit extend loop member
/dports/biology/hisat2/hisat2-2.2.1/
H A Dread.h437 nExIters = in reset()
466 uint64_t nExIters; // iterations of seed hit extend loop member
H A Dsam.h921 itoa10<uint64_t>(prm.nExIters, buf); in printAlignedOptFlags()
1243 itoa10<uint64_t>(prm.nExIters, buf); in printEmptyOptFlags()
H A Daligner_sw_driver.h1443 if(prm.nExIters >= maxIters) { in extendSeeds()
1446 prm.nExIters++; in extendSeeds()
2133 if(prm.nExIters >= maxIters) { in extendSeedsPaired()
2151 prm.nExIters++; in extendSeedsPaired()
H A Dhisat_bp.cpp3249 assert_leq(prm.nExIters, mxIter[i]); in multiseedSearchWorker_hisat_bp()
H A Dhisat2.cpp3596 assert_leq(prm.nExIters, mxIter[i]); in multiseedSearchWorker_hisat2()