Searched refs:nExIters (Results 1 – 10 of 10) sorted by relevance
345 nExIters = in reset()375 uint64_t nExIters; // iterations of seed hit extend loop member
525 itoa10<uint64_t>(prm.nExIters, buf); in printAlignedOptFlags()880 itoa10<uint64_t>(prm.nExIters, buf); in printEmptyOptFlags()
918 if(prm.nExIters >= maxIters) { in extendSeeds()921 prm.nExIters++; in extendSeeds()1604 if(prm.nExIters >= maxIters) { in extendSeedsPaired()1622 prm.nExIters++; in extendSeedsPaired()
4055 assert_leq(prm.nExIters, mxIter[i]); in multiseedSearchWorker()
350 nExIters = in reset()380 uint64_t nExIters; // iterations of seed hit extend loop member
437 nExIters = in reset()466 uint64_t nExIters; // iterations of seed hit extend loop member
921 itoa10<uint64_t>(prm.nExIters, buf); in printAlignedOptFlags()1243 itoa10<uint64_t>(prm.nExIters, buf); in printEmptyOptFlags()
1443 if(prm.nExIters >= maxIters) { in extendSeeds()1446 prm.nExIters++; in extendSeeds()2133 if(prm.nExIters >= maxIters) { in extendSeedsPaired()2151 prm.nExIters++; in extendSeedsPaired()
3249 assert_leq(prm.nExIters, mxIter[i]); in multiseedSearchWorker_hisat_bp()
3596 assert_leq(prm.nExIters, mxIter[i]); in multiseedSearchWorker_hisat2()