Searched refs:nRateCats (Results 1 – 3 of 3) sorted by relevance
2856 if (r < nRateCats) in CondLikeRoot_Gen_GibbsGamma()2885 if (r < nRateCats) in CondLikeRoot_Gen_GibbsGamma()2911 if (r < nRateCats) in CondLikeRoot_Gen_GibbsGamma()2935 if (r < nRateCats) in CondLikeRoot_Gen_GibbsGamma()3200 nRateCats; in CondLikeRoot_NUC4_GibbsGamma() local3310 if (r < nRateCats) in CondLikeRoot_NUC4_GibbsGamma()3341 if (r < nRateCats) in CondLikeRoot_NUC4_GibbsGamma()3370 if (r < nRateCats) in CondLikeRoot_NUC4_GibbsGamma()3394 if (r < nRateCats) in CondLikeRoot_NUC4_GibbsGamma()4675 nRateCats = 1; in CondLikeUp_Gen()[all …]
5356 nRateCats = nPosRateCats = m->numRateCats; in GibbsSampleGamma()5358 nRateCats++; in GibbsSampleGamma()5429 for (k=1; k<nRateCats; k++) in GibbsSampleGamma()5435 for (k=0; k<nRateCats; k++) in GibbsSampleGamma()5449 for (k=1; k<nRateCats; k++) in GibbsSampleGamma()5452 ran = RandomNumber(seed) * catLike[nRateCats-1][c]; in GibbsSampleGamma()5453 for (k=0; k<nRateCats; k++) in GibbsSampleGamma()5700 int d, i, j, useAugmentedModels, nRateCats; in InitAugmentedModels() local5730 nRateCats = m->numRateCats; in InitAugmentedModels()5732 nRateCats = m->numRateCats + 1; in InitAugmentedModels()[all …]
1331 int nRateCats; member1662 int nRateCats = nDefaultRateCats; in main() local1839 nRateCats = atoi(argv[iArg]); in main()1840 if (nRateCats < 1) { in main()1845 nRateCats = 1; in main()2003 if (nRateCats == 1) in main()2333 SetMLRates(/*IN/OUT*/NJ, nRateCats); in main()2382 SetMLRates(/*IN/OUT*/NJ, nRateCats); in main()2411 if (gammaLogLk && nRateCats > 1) { in main()2412 numeric_t *rates = MLSiteRates(nRateCats); in main()[all …]