Searched refs:nUgFail (Results 1 – 10 of 10) sorted by relevance
818 prm.nUgFail = 0; in extendSeeds()1049 prm.nUgFail++; in extendSeeds()1050 if(prm.nUgFail >= maxUgStreak) { in extendSeeds()1058 if(prm.nUgFail >= maxUgStreak) { in extendSeeds()1065 if(prm.nUgFail > prm.nUgFailStreak) { in extendSeeds()1066 prm.nUgFailStreak = prm.nUgFail; in extendSeeds()1068 prm.nUgFail = 0; in extendSeeds()1498 prm.nUgFail = 0; in extendSeedsPaired()2362 assert_gt(prm.nUgFail, 0); in extendSeedsPaired()2368 prm.nUgFailStreak = prm.nUgFail; in extendSeedsPaired()[all …]
354 nUgFail = nUgFailStreak = nUgLastSucc = in reset()424 uint64_t nUgFail; // number of ungap failures in a row up until now member
433 itoa10<uint64_t>(prm.nUgFail, buf); in printAlignedOptFlags()788 itoa10<uint64_t>(prm.nUgFail, buf); in printEmptyOptFlags()
4061 assert_leq(prm.nUgFail, streak[i]); in multiseedSearchWorker()
1343 prm.nUgFail = 0; in extendSeeds()1572 prm.nUgFail++; in extendSeeds()1573 if(prm.nUgFail >= maxUgStreak) { in extendSeeds()1581 if(prm.nUgFail >= maxUgStreak) { in extendSeeds()1588 if(prm.nUgFail > prm.nUgFailStreak) { in extendSeeds()1589 prm.nUgFailStreak = prm.nUgFail; in extendSeeds()1591 prm.nUgFail = 0; in extendSeeds()2027 prm.nUgFail = 0; in extendSeedsPaired()2896 assert_gt(prm.nUgFail, 0); in extendSeedsPaired()2902 prm.nUgFailStreak = prm.nUgFail; in extendSeedsPaired()[all …]
446 nUgFail = nUgFailStreak = nUgLastSucc = in reset()515 uint64_t nUgFail; // number of ungap failures in a row up until now member
829 itoa10<uint64_t>(prm.nUgFail, buf); in printAlignedOptFlags()1151 itoa10<uint64_t>(prm.nUgFail, buf); in printEmptyOptFlags()
3255 assert_leq(prm.nUgFail, streak[i]); in multiseedSearchWorker_hisat_bp()
3602 assert_leq(prm.nUgFail, streak[i]); in multiseedSearchWorker_hisat2()
359 nUgFail = nUgFailStreak = nUgLastSucc = in reset()429 uint64_t nUgFail; // number of ungap failures in a row up until now member