Searched refs:n_gts (Results 1 – 4 of 4) sorted by relevance
| /dports/biology/vt/vt-0.57721/ |
| H A D | decompose_blocksub.cpp | 258 int n_gts = 0; in decompose_blocksub() local
259 int ploidy = bcf_get_genotypes(odw->hdr, nv, >s, &n_gts); in decompose_blocksub()
261 for (int32_t igt=0; igt < n_gts; ++igt) in decompose_blocksub()
266 bcf_update_genotypes(odw->hdr, nv, gts, n_gts); in decompose_blocksub()
322 int n_gts = 0; in decompose_blocksub() local
323 int ploidy = bcf_get_genotypes(odw->hdr, nv, >s, &n_gts); in decompose_blocksub()
325 for (int32_t igt=0; igt < n_gts; ++igt) in decompose_blocksub()
330 bcf_update_genotypes(odw->hdr, nv, gts, n_gts); in decompose_blocksub()
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| H A D | compute_features2.cpp | 177 int32_t n_gts = 0; in compute_features() local
195 int32_t ploidy = bcf_get_genotypes(odr->hdr, v, >s, &n_gts); in compute_features()
198 if (!n_gts) in compute_features()
319 if(n_gts) free(gts); in compute_features()
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| H A D | compute_features.cpp | 175 int32_t n_gts = 0; in compute_features() local
193 int32_t ploidy = bcf_get_genotypes(odr->hdr, v, >s, &n_gts); in compute_features()
196 if (!n_gts) in compute_features()
317 if(n_gts) free(gts); in compute_features()
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| H A D | estimate.cpp | 316 int32_t n_gts = 0; in estimate() local
344 int32_t ploidy = bcf_get_genotypes(odr->hdr, v, >s, &n_gts); in estimate()
385 if (!n_gts) in estimate()
544 if(n_gts) free(gts); in estimate()
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