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Searched refs:n_reads (Results 1 – 25 of 102) sorted by relevance

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/dports/biology/py-pysam/pysam-0.18.0/samtools/
H A Dbam_stat.c40 long long n_reads[2], n_mapped[2], n_pair_all[2], n_pair_map[2], n_pair_good[2]; member
51 ++s->n_reads[w]; in flagstat_loop()
127 …printf("%lld + %lld in total (QC-passed reads + QC-failed reads)\n", s->n_reads[0], s->n_reads[1]); in out_fmt_default()
133 …0], s->n_mapped[1], percent(b0, s->n_mapped[0], s->n_reads[0]), percent(b1, s->n_mapped[1], s->n_r… in out_fmt_default()
192 s->n_reads[0], in out_fmt_json()
199 percent_json(b0, s->n_mapped[0], s->n_reads[0]), in out_fmt_json()
212 s->n_reads[1], in out_fmt_json()
219 percent_json(b1, s->n_mapped[1], s->n_reads[1]), in out_fmt_json()
237 printf("%lld\t%lld\ttotal (QC-passed reads + QC-failed reads)\n", s->n_reads[0], s->n_reads[1]); in out_fmt_tsv()
244 …\t%s\tmapped %%\n", percent(b0, s->n_mapped[0], s->n_reads[0]), percent(b1, s->n_mapped[1], s->n_r… in out_fmt_tsv()
H A Dbam_stat.c.pysam.c42 long long n_reads[2], n_mapped[2], n_pair_all[2], n_pair_map[2], n_pair_good[2]; member
53 ++s->n_reads[w]; in flagstat_loop()
129 …tdout, "%lld + %lld in total (QC-passed reads + QC-failed reads)\n", s->n_reads[0], s->n_reads[1]); in out_fmt_default()
135 …0], s->n_mapped[1], percent(b0, s->n_mapped[0], s->n_reads[0]), percent(b1, s->n_mapped[1], s->n_r… in out_fmt_default()
194 s->n_reads[0], in out_fmt_json()
201 percent_json(b0, s->n_mapped[0], s->n_reads[0]), in out_fmt_json()
214 s->n_reads[1], in out_fmt_json()
221 percent_json(b1, s->n_mapped[1], s->n_reads[1]), in out_fmt_json()
239 …s_stdout, "%lld\t%lld\ttotal (QC-passed reads + QC-failed reads)\n", s->n_reads[0], s->n_reads[1]); in out_fmt_tsv()
246 …\t%s\tmapped %%\n", percent(b0, s->n_mapped[0], s->n_reads[0]), percent(b1, s->n_mapped[1], s->n_r… in out_fmt_tsv()
/dports/biology/samtools/samtools-1.14/
H A Dbam_stat.c40 long long n_reads[2], n_mapped[2], n_pair_all[2], n_pair_map[2], n_pair_good[2]; member
51 ++s->n_reads[w]; in flagstat_loop()
127 …printf("%lld + %lld in total (QC-passed reads + QC-failed reads)\n", s->n_reads[0], s->n_reads[1]); in out_fmt_default()
133 …0], s->n_mapped[1], percent(b0, s->n_mapped[0], s->n_reads[0]), percent(b1, s->n_mapped[1], s->n_r… in out_fmt_default()
192 s->n_reads[0], in out_fmt_json()
199 percent_json(b0, s->n_mapped[0], s->n_reads[0]), in out_fmt_json()
212 s->n_reads[1], in out_fmt_json()
219 percent_json(b1, s->n_mapped[1], s->n_reads[1]), in out_fmt_json()
237 printf("%lld\t%lld\ttotal (QC-passed reads + QC-failed reads)\n", s->n_reads[0], s->n_reads[1]); in out_fmt_tsv()
244 …\t%s\tmapped %%\n", percent(b0, s->n_mapped[0], s->n_reads[0]), percent(b1, s->n_mapped[1], s->n_r… in out_fmt_tsv()
/dports/devel/binutils/binutils-2.37/gas/testsuite/gas/sparc/
H A Dprefetch.d10 0: c1 68 40 00 prefetch \[ %g1 \], #n_reads
12 8: c1 68 40 00 prefetch \[ %g1 \], #n_reads
16 18: c1 e8 42 00 prefetcha \[ %g1 \] #ASI_AIUP, #n_reads
18 20: c1 e8 42 20 prefetcha \[ %g1 \] #ASI_AIUS, #n_reads
/dports/devel/tigcc/tigcc-0.96.b8_10/gnu/binutils-2.16.1/gas/testsuite/gas/sparc/
H A Dprefetch.d10 0: c1 68 40 00 prefetch \[ %g1 \], #n_reads
12 8: c1 68 40 00 prefetch \[ %g1 \], #n_reads
16 18: c1 e8 42 00 prefetcha \[ %g1 \] #ASI_AIUP, #n_reads
18 20: c1 e8 42 20 prefetcha \[ %g1 \] #ASI_AIUS, #n_reads
/dports/lang/gnatdroid-binutils-x86/binutils-2.27/gas/testsuite/gas/sparc/
H A Dprefetch.d10 0: c1 68 40 00 prefetch \[ %g1 \], #n_reads
12 8: c1 68 40 00 prefetch \[ %g1 \], #n_reads
16 18: c1 e8 42 00 prefetcha \[ %g1 \] #ASI_AIUP, #n_reads
18 20: c1 e8 42 20 prefetcha \[ %g1 \] #ASI_AIUS, #n_reads
/dports/devel/arm-elf-binutils/binutils-2.37/gas/testsuite/gas/sparc/
H A Dprefetch.d10 0: c1 68 40 00 prefetch \[ %g1 \], #n_reads
12 8: c1 68 40 00 prefetch \[ %g1 \], #n_reads
16 18: c1 e8 42 00 prefetcha \[ %g1 \] #ASI_AIUP, #n_reads
18 20: c1 e8 42 20 prefetcha \[ %g1 \] #ASI_AIUS, #n_reads
/dports/devel/gnulibiberty/binutils-2.37/gas/testsuite/gas/sparc/
H A Dprefetch.d10 0: c1 68 40 00 prefetch \[ %g1 \], #n_reads
12 8: c1 68 40 00 prefetch \[ %g1 \], #n_reads
16 18: c1 e8 42 00 prefetcha \[ %g1 \] #ASI_AIUP, #n_reads
18 20: c1 e8 42 20 prefetcha \[ %g1 \] #ASI_AIUS, #n_reads
/dports/devel/zpu-gcc/zpu-toolchain-1.0/toolchain/binutils/gas/testsuite/gas/sparc/
H A Dprefetch.d10 0: c1 68 40 00 prefetch \[ %g1 \], #n_reads
12 8: c1 68 40 00 prefetch \[ %g1 \], #n_reads
16 18: c1 e8 42 00 prefetcha \[ %g1 \] #ASI_AIUP, #n_reads
18 20: c1 e8 42 20 prefetcha \[ %g1 \] #ASI_AIUS, #n_reads
/dports/lang/gnatdroid-binutils/binutils-2.27/gas/testsuite/gas/sparc/
H A Dprefetch.d10 0: c1 68 40 00 prefetch \[ %g1 \], #n_reads
12 8: c1 68 40 00 prefetch \[ %g1 \], #n_reads
16 18: c1 e8 42 00 prefetcha \[ %g1 \] #ASI_AIUP, #n_reads
18 20: c1 e8 42 20 prefetcha \[ %g1 \] #ASI_AIUS, #n_reads
/dports/devel/zpu-binutils/zpu-toolchain-1.0/toolchain/binutils/gas/testsuite/gas/sparc/
H A Dprefetch.d10 0: c1 68 40 00 prefetch \[ %g1 \], #n_reads
12 8: c1 68 40 00 prefetch \[ %g1 \], #n_reads
16 18: c1 e8 42 00 prefetcha \[ %g1 \] #ASI_AIUP, #n_reads
18 20: c1 e8 42 20 prefetcha \[ %g1 \] #ASI_AIUS, #n_reads
/dports/devel/djgpp-binutils/binutils-2.17/gas/testsuite/gas/sparc/
H A Dprefetch.d10 0: c1 68 40 00 prefetch \[ %g1 \], #n_reads
12 8: c1 68 40 00 prefetch \[ %g1 \], #n_reads
16 18: c1 e8 42 00 prefetcha \[ %g1 \] #ASI_AIUP, #n_reads
18 20: c1 e8 42 20 prefetcha \[ %g1 \] #ASI_AIUS, #n_reads
/dports/biology/ugene/ugene-40.1/src/libs_3rdparty/samtools/src/samtools/
H A Dbam_stat.c6 long long n_reads[2], n_mapped[2], n_pair_all[2], n_pair_map[2], n_pair_good[2]; member
14 ++(s)->n_reads[w]; \
62 printf("%lld + %lld in total (QC-passed reads + QC-failed reads)\n", s->n_reads[0], s->n_reads[1]); in bam_flagstat()
64 …d[0], s->n_mapped[1], (float)s->n_mapped[0] / s->n_reads[0] * 100.0, (float)s->n_mapped[1] / s->n_… in bam_flagstat()
/dports/biology/stringtie/stringtie-2.1.1/samtools-0.1.18/
H A Dbam_stat.c6 long long n_reads[2], n_mapped[2], n_pair_all[2], n_pair_map[2], n_pair_good[2]; member
14 ++(s)->n_reads[w]; \
62 printf("%lld + %lld in total (QC-passed reads + QC-failed reads)\n", s->n_reads[0], s->n_reads[1]); in bam_flagstat()
64 …d[0], s->n_mapped[1], (float)s->n_mapped[0] / s->n_reads[0] * 100.0, (float)s->n_mapped[1] / s->n_… in bam_flagstat()
/dports/multimedia/v4l-utils/linux-5.13-rc2/arch/sparc/lib/
H A Dchecksum_64.S45 prefetch [%o0 + 0x000], #n_reads
47 prefetch [%o0 + 0x040], #n_reads
59 prefetch [%o0 + 0x080], #n_reads
62 prefetch [%o0 + 0x0c0], #n_reads
65 prefetch [%o0 + 0x100], #n_reads
72 prefetch [%o0 + 0x140], #n_reads
103 prefetch [%o0 + 0x180], #n_reads
/dports/multimedia/v4l_compat/linux-5.13-rc2/arch/sparc/lib/
H A Dchecksum_64.S45 prefetch [%o0 + 0x000], #n_reads
47 prefetch [%o0 + 0x040], #n_reads
59 prefetch [%o0 + 0x080], #n_reads
62 prefetch [%o0 + 0x0c0], #n_reads
65 prefetch [%o0 + 0x100], #n_reads
72 prefetch [%o0 + 0x140], #n_reads
103 prefetch [%o0 + 0x180], #n_reads
/dports/multimedia/libv4l/linux-5.13-rc2/arch/sparc/lib/
H A Dchecksum_64.S45 prefetch [%o0 + 0x000], #n_reads
47 prefetch [%o0 + 0x040], #n_reads
59 prefetch [%o0 + 0x080], #n_reads
62 prefetch [%o0 + 0x0c0], #n_reads
65 prefetch [%o0 + 0x100], #n_reads
72 prefetch [%o0 + 0x140], #n_reads
103 prefetch [%o0 + 0x180], #n_reads
/dports/biology/seqan1/seqan-1.3.1/lib/samtools/
H A Dbam_stat.c6 long long n_reads, n_mapped, n_pair_all, n_pair_map, n_pair_good; member
13 ++(s)->n_reads; \
62 printf("%lld in total\n", s->n_reads); in bam_flagstat()
65 printf("%lld mapped (%.2f%%)\n", s->n_mapped, (float)s->n_mapped / s->n_reads * 100.0); in bam_flagstat()
/dports/biology/iolib/io_lib-io_lib-1-14-10/progs/
H A Dscram_flagstat.c100 int64_t n_reads[2], n_mapped[2], n_pair_all[2], n_pair_map[2], n_pair_good[2]; member
261 ++st.n_reads[w]; in main()
304 …PRId64" + %"PRId64" in total (QC-passed reads + QC-failed reads)\n", st.n_reads[0], st.n_reads[1]); in main()
306 …d[0], st.n_mapped[1], (float)st.n_mapped[0] / st.n_reads[0] * 100.0, (float)st.n_mapped[1] / st.n_… in main()
/dports/emulators/qemu-utils/qemu-4.2.1/tests/
H A Drcutorture.c68 long long n_reads = 0LL; variable
131 n_reads += n_reads_local; in rcu_read_perf_test()
176 n_reads, n_updates, nreaders, nupdaters, duration); in perftestrun()
179 (double)n_reads), in perftestrun()
273 n_reads += n_reads_local; in rcu_read_stress_test()
355 n_reads, n_updates, n_mberror); in stresstest()
/dports/emulators/qemu5/qemu-5.2.0/tests/
H A Drcutorture.c90 long long n_reads = 0LL; variable
138 n_reads += n_reads_local; in rcu_read_perf_test()
183 n_reads, n_updates, nreaders, nupdaters, duration); in perftestrun()
186 (double)n_reads), in perftestrun()
280 n_reads += n_reads_local; in rcu_read_stress_test()
382 n_reads, n_updates, n_mberror); in stresstest()
/dports/emulators/qemu-guest-agent/qemu-5.0.1/tests/
H A Drcutorture.c90 long long n_reads = 0LL; variable
138 n_reads += n_reads_local; in rcu_read_perf_test()
183 n_reads, n_updates, nreaders, nupdaters, duration); in perftestrun()
186 (double)n_reads), in perftestrun()
280 n_reads += n_reads_local; in rcu_read_stress_test()
382 n_reads, n_updates, n_mberror); in stresstest()
/dports/emulators/qemu42/qemu-4.2.1/tests/
H A Drcutorture.c68 long long n_reads = 0LL; variable
131 n_reads += n_reads_local; in rcu_read_perf_test()
176 n_reads, n_updates, nreaders, nupdaters, duration); in perftestrun()
179 (double)n_reads), in perftestrun()
273 n_reads += n_reads_local; in rcu_read_stress_test()
355 n_reads, n_updates, n_mberror); in stresstest()
/dports/emulators/qemu-powernv/qemu-powernv-3.0.50/tests/
H A Drcutorture.c68 long long n_reads = 0LL; variable
131 n_reads += n_reads_local; in rcu_read_perf_test()
176 n_reads, n_updates, nreaders, nupdaters, duration); in perftestrun()
179 (double)n_reads), in perftestrun()
273 n_reads += n_reads_local; in rcu_read_stress_test()
355 n_reads, n_updates, n_mberror); in stresstest()
/dports/emulators/qemu/qemu-6.2.0/tests/unit/
H A Drcutorture.c90 long long n_reads = 0LL; variable
138 n_reads += n_reads_local; in rcu_read_perf_test()
183 n_reads, n_updates, nreaders, nupdaters, duration); in perftestrun()
186 (double)n_reads), in perftestrun()
280 n_reads += n_reads_local; in rcu_read_stress_test()
382 n_reads, n_updates, n_mberror); in stresstest()

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