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Searched refs:neighborBondNumB (Results 1 – 4 of 4) sorted by relevance

/dports/science/cdk/cdk-cdk-2.3/legacy/src/main/java/org/openscience/cdk/smsd/algorithm/mcgregor/
H A DMcGregor.java328 int neighborBondNumB = mcGregorHelper.getNeighborBondNumB(); in iterator() local
340 int size = neighborBondNumA * neighborBondNumB; in iterator()
489 int neighborBondNumB = mcGregorHelper.getNeighborBondNumB(); in findMcGregorMapping() local
494 for (int y = 0; y < neighborBondNumB; y++) { in findMcGregorMapping()
495 if (mArcs.get(x * neighborBondNumB + y) == 1) { in findMcGregorMapping()
572 if (yIndex == neighborBondNumB) { in partsearch()
669 int size = neighborBondNumA * neighborBondNumB; in startsearch()
680 if (yIndex == neighborBondNumB) { in startsearch()
687 yIndex = neighborBondNumB - 1; in startsearch()
744 if (yIndex == neighborBondNumB) { in setArcs()
[all …]
H A DMcGregorChecks.java76 for (int column = 0; column < neighborBondNumB; column++) { in isFurtherMappingPossible()
251 int neighborBondNumB = mcGregorHelper.getNeighborBondNumB(); in removeRedundantArcs() local
263 for (int y = 0; y < neighborBondNumB; y++) { in removeRedundantArcs()
269 marcs.set(x * neighborBondNumB + y, 0); in removeRedundantArcs()
276 marcs.set(v * neighborBondNumB + column, 0); in removeRedundantArcs()
279 for (int w = 0; w < neighborBondNumB; w++) { in removeRedundantArcs()
280 marcs.set(row * neighborBondNumB + w, 0); in removeRedundantArcs()
283 marcs.set(row * neighborBondNumB + column, 1); in removeRedundantArcs()
487 for (int b = 0; b < neighborBondNumB; b++) { in countArcsLeft()
489 if (tempmarcs.get(a * neighborBondNumB + b) == (1)) { in countArcsLeft()
[all …]
H A DMcgregorHelper.java48 private final int neighborBondNumB; field in McgregorHelper
77 … int neighborBondNumA, int neighborBondNumB, List<Integer> iBondNeighborAtomsA, in McgregorHelper() argument
87 this.neighborBondNumB = neighborBondNumB; in McgregorHelper()
145 return neighborBondNumB; in getNeighborBondNumB()
H A DTargetProcessor.java47 private int neighborBondNumB = 0; field in TargetProcessor
77 this.neighborBondNumB = neighborBondnumB; in TargetProcessor()
189 neighborBondNumB++; in unMappedAtomsEqualsIndexI()
214 neighborBondNumB++; in unMappedAtomsEqualsIndexJ()
240 neighborBondNumB++; in unMappedAtomsEqualsIndexI()
267 neighborBondNumB++; in unMappedAtomsEqualsIndexJ()
344 return this.neighborBondNumB; in getNeighborBondNumB()