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Searched refs:nelt_added (Results 1 – 2 of 2) sorted by relevance

/dports/biology/bowtie2/bowtie2-2.4.4/
H A Daligner_sw_driver.cpp646 size_t nelt_added = 0; in prioritizeSATups() local
656 for(size_t j = 0; j < nsmall && nelt_added < maxelt; j++) { in prioritizeSATups()
673 nelt_added += satpos_.back().sat.size(); in prioritizeSATups()
680 if(nelt_added >= maxelt || nsmall == satpos2_.size()) { in prioritizeSATups()
681 nelt_out = nelt_added; in prioritizeSATups()
692 while(nelt_added < maxelt && nelt_added < nelt) { in prioritizeSATups()
734 nelt_added++; in prioritizeSATups()
736 nelt_out = nelt_added; in prioritizeSATups()
/dports/biology/hisat2/hisat2-2.2.1/
H A Daligner_sw_driver.h1169 index_t nelt_added = 0; in prioritizeSATups() local
1179 for(index_t j = 0; j < nsmall && nelt_added < maxelt; j++) { in prioritizeSATups()
1196 nelt_added += satpos_.back().sat.size(); in prioritizeSATups()
1203 if(nelt_added >= maxelt || nsmall == satpos2_.size()) { in prioritizeSATups()
1204 nelt_out = nelt_added; in prioritizeSATups()
1215 while(nelt_added < maxelt && nelt_added < nelt) { in prioritizeSATups()
1257 nelt_added++; in prioritizeSATups()
1259 nelt_out = nelt_added; in prioritizeSATups()