Searched refs:new_geno (Results 1 – 3 of 3) sorted by relevance
532 uintptr_t new_geno; in ld_process_load() local551 *geno_ptr++ = new_geno; in ld_process_load()580 new_geno = *geno_ptr; in ld_process_load()581 *geno_ptr++ = new_geno + ((~(new_geno | (new_geno >> 1))) & (*founder_male_include2++)); in ld_process_load()586 new_geno = *geno_ptr++; in ld_process_load()588 new_geno = (new_geno ^ FIVEMASK) & FIVEMASK; in ld_process_load()613 new_geno = (new_geno ^ FIVEMASK) & FIVEMASK; in ld_process_load()1361 uintptr_t new_geno; in ld_process_load2() local1367 *geno_ptr++ = new_geno; in ld_process_load2()1374 new_geno = *geno_ptr; in ld_process_load2()[all …]
2658 uintptr_t new_geno; in ApplyHardCallThresh() local2660 new_geno = 3; in ApplyHardCallThresh()2662 new_geno = (dosage_int + kDosage4th) / kDosageMid; in ApplyHardCallThresh()2665 const uintptr_t geno_xor = new_geno ^ prev_geno; in ApplyHardCallThresh()2698 uintptr_t new_geno; in ApplyHardCallThreshPhased() local2700 new_geno = 3; in ApplyHardCallThreshPhased()2702 new_geno = (dosage_int + kDosage4th) / kDosageMid; in ApplyHardCallThreshPhased()2705 const uintptr_t geno_xor = new_geno ^ prev_geno; in ApplyHardCallThreshPhased()2711 if (new_geno == 1) { in ApplyHardCallThreshPhased()2731 assert(new_geno != 1); in ApplyHardCallThreshPhased()
14000 const uintptr_t new_geno = (cur_hap_4char + (cur_hap_4char >> 16)) & 3; in OxHapslegendToPgen() local14001 genovec_word |= new_geno << (2 * sample_idx_lowbits); in OxHapslegendToPgen()14036 const uintptr_t new_geno = (cur_hap_4char + (cur_hap_4char >> 16)) & 3; in OxHapslegendToPgen() local14037 genovec_word |= new_geno << (2 * sample_idx_lowbits); in OxHapslegendToPgen()