Searched refs:new_hspcnt (Results 1 – 6 of 6) sorted by relevance
/dports/biology/ncbi-toolkit/ncbi/algo/blast/core/ |
H A D | blast_hits.c | 2635 Int4 new_hspcnt) in s_BlastHSPListsCombineByScore() argument 2640 ASSERT(new_hspcnt <= combined_hsp_list->allocated); in s_BlastHSPListsCombineByScore() 2649 combined_hsp_list->hspcnt = new_hspcnt; in s_BlastHSPListsCombineByScore() 2662 for (index = 0; index < new_hspcnt; ++index) { in s_BlastHSPListsCombineByScore() 2686 combined_hsp_list->hspcnt = new_hspcnt; in s_BlastHSPListsCombineByScore() 2698 Int4 new_hspcnt; in Blast_HSPListAppend() local 2714 if (new_hspcnt > combined_hsp_list->allocated && in Blast_HSPListAppend() 2727 new_hspcnt = combined_hsp_list->allocated; in Blast_HSPListAppend() 2752 Int4 hspcnt1, hspcnt2, new_hspcnt = 0; in Blast_HSPListsMerge() local 2891 new_hspcnt = in Blast_HSPListsMerge() [all …]
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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/core/ |
H A D | blast_hits.c | 2743 Int4 new_hspcnt) in s_BlastHSPListsCombineByScore() argument 2748 ASSERT(new_hspcnt <= combined_hsp_list->allocated); in s_BlastHSPListsCombineByScore() 2757 combined_hsp_list->hspcnt = new_hspcnt; in s_BlastHSPListsCombineByScore() 2770 for (index = 0; index < new_hspcnt; ++index) { in s_BlastHSPListsCombineByScore() 2794 combined_hsp_list->hspcnt = new_hspcnt; in s_BlastHSPListsCombineByScore() 2806 Int4 new_hspcnt; in Blast_HSPListAppend() local 2822 if (new_hspcnt > combined_hsp_list->allocated && in Blast_HSPListAppend() 2835 new_hspcnt = combined_hsp_list->allocated; in Blast_HSPListAppend() 2860 Int4 hspcnt1, hspcnt2, new_hspcnt = 0; in Blast_HSPListsMerge() local 2999 new_hspcnt = in Blast_HSPListsMerge() [all …]
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/core/ |
H A D | blast_hits.c | 2743 Int4 new_hspcnt) in s_BlastHSPListsCombineByScore() argument 2748 ASSERT(new_hspcnt <= combined_hsp_list->allocated); in s_BlastHSPListsCombineByScore() 2757 combined_hsp_list->hspcnt = new_hspcnt; in s_BlastHSPListsCombineByScore() 2770 for (index = 0; index < new_hspcnt; ++index) { in s_BlastHSPListsCombineByScore() 2794 combined_hsp_list->hspcnt = new_hspcnt; in s_BlastHSPListsCombineByScore() 2806 Int4 new_hspcnt; in Blast_HSPListAppend() local 2822 if (new_hspcnt > combined_hsp_list->allocated && in Blast_HSPListAppend() 2835 new_hspcnt = combined_hsp_list->allocated; in Blast_HSPListAppend() 2860 Int4 hspcnt1, hspcnt2, new_hspcnt = 0; in Blast_HSPListsMerge() local 2999 new_hspcnt = in Blast_HSPListsMerge() [all …]
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/dports/biology/ncbi-toolkit/ncbi/tools/ |
H A D | mblast.c | 3405 Int4 index, new_hspcnt, index1, index2; in BlastSortUniqHspArray() local 3413 for (index=1, new_hspcnt=0; index<hitlist->hspcnt; index++) { in BlastSortUniqHspArray() 3417 for (index1 = new_hspcnt; inclusion_status != e_DiagDistant && in BlastSortUniqHspArray() 3418 index1 >= 0 && new_hspcnt-index1 < MAX_NUM_CHECK_INCLUSION; in BlastSortUniqHspArray() 3440 for (index2 = ++index1; index1 <= new_hspcnt; index1++) { in BlastSortUniqHspArray() 3444 new_hspcnt = index2 - 1; in BlastSortUniqHspArray() 3448 hsp_array[++new_hspcnt] = hsp_array[index]; in BlastSortUniqHspArray() 3451 MemSet(&hsp_array[new_hspcnt+1], 0, in BlastSortUniqHspArray() 3452 (hitlist->hspcnt - new_hspcnt - 1)*sizeof(BLAST_HSPPtr)); in BlastSortUniqHspArray() 3453 hitlist->hspcnt = new_hspcnt + 1; in BlastSortUniqHspArray()
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H A D | blastutl.c | 9004 Int4 new_hspcnt=0; in RealBlastGetGappedAlignmentTraceback() local 9375 new_hspcnt--; in RealBlastGetGappedAlignmentTraceback() 9387 new_hspcnt++; in RealBlastGetGappedAlignmentTraceback() 9462 if (search->pbp->hsp_num_max > new_hspcnt) { in RealBlastGetGappedAlignmentTraceback() 9466 new_hspcnt = MIN(new_hspcnt, search->pbp->hsp_num_max); in RealBlastGetGappedAlignmentTraceback() 9470 for (index=0; index<new_hspcnt; index++) { in RealBlastGetGappedAlignmentTraceback() 9514 for (index=0; index<new_hspcnt; index++) { in RealBlastGetGappedAlignmentTraceback() 9547 return new_hspcnt; in RealBlastGetGappedAlignmentTraceback() 9578 Int4 hspcnt=0, new_hspcnt=0, hspset_cnt_old; in SumBlastGetGappedAlignmentEx() local 9679 if (new_hspcnt > 0) in SumBlastGetGappedAlignmentEx() [all …]
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H A D | blast.c | 6302 Int4 hspcnt1, hspcnt2, new_hspcnt = 0; in BLASTMergeHitLists() local 6387 new_hspcnt = hitlist2->hspcnt + hitlist1->hspcnt; in BLASTMergeHitLists() 6389 new_hspcnt = MIN(new_hspcnt, search->pbp->hsp_num_max); in BLASTMergeHitLists() 6391 if (new_hspcnt >= hitlist1->hspmax-1 && hitlist1->do_not_reallocate == FALSE) { in BLASTMergeHitLists() 6392 Int4 new_allocated = 2*new_hspcnt; in BLASTMergeHitLists() 6404 new_hspcnt = MIN(new_hspcnt, hitlist1->hspmax); in BLASTMergeHitLists() 6407 if (new_hspcnt >= hitlist2->hspcnt + hitlist1->hspcnt) { in BLASTMergeHitLists() 6426 for (index = 0; index < new_hspcnt; ++index) { in BLASTMergeHitLists()
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