Searched refs:next_exon (Results 1 – 9 of 9) sorted by relevance
192 tmp_block->next_exon = tmp_block1->next_exon; in SIM4()207 prev->next_exon = tmp_block->next_exon; in SIM4()503 last->next_exon = Rblock->next_exon; in SIM4()526 new->next_exon = Lblock->next_exon; in SIM4()549 new->next_exon = tmp_block->next_exon; in SIM4()1411 if (t->next_exon && t->next_exon->to1) { in check_consistency_intron_ori()2566 tmp0->next_exon = tmp1->next_exon; in merge()3004 prev->next_exon = t->next_exon; free(t); t = prev->next_exon; in remove_polyA_tails()3013 prev->next_exon = t->next_exon; free(t); t = prev->next_exon; in remove_polyA_tails()3019 while (t && t->next_exon && t->next_exon->to1) { in remove_polyA_tails()[all …]
113 if (!Exons || ! Exons->next_exon || ! Exons->next_exon->to1) return; in remove_polyA_back()122 exons_tail = Exons->next_exon; prev = Exons; in remove_polyA_back()123 for ( ; exons_tail->next_exon && exons_tail->next_exon->to1; in remove_polyA_back()124 prev=exons_tail, exons_tail=exons_tail->next_exon); in remove_polyA_back()176 prev->next_exon = (*exons)->next_exon; in trim_polyA_align()252 prev->next_exon = (*exons)->next_exon; in trim_polyA_align()276 if (!Exons || !Exons->next_exon || !Exons->next_exon->to1) return; in remove_polyT_front()284 exons_head = Exons->next_exon; trim_p = TRUE; in remove_polyT_front()306 Exons->next_exon = exons_head; in remove_polyT_front()332 t = *exons; *exons = t->next_exon; free(t); in trim_polyT_align()[all …]
511 if ((exons==NULL) || (!exons->to1 && (exons->next_exon==NULL))) in IDISPLAY()518 t0 = t0->next_exon; in IDISPLAY()523 starti = (t0->next_exon && t0->next_exon->to1) ? (t0->to1+1):-1; in IDISPLAY()543 t0 = t0->next_exon; in IDISPLAY()544 starti=(t0->next_exon && t0->next_exon->to1)?(t0->to1+1):-1; in IDISPLAY()580 t0 = t0->next_exon; in IDISPLAY()581 starti=(t0->next_exon && t0->next_exon->to1)?(t0->to1+1):-1; in IDISPLAY()
74 struct exon *next_exon; member
696 t = t->next_exon; in add_offset_exons()751 t = t->next_exon; in print_exon_stats()
103 next unless my $next_exon = $exons[$i+1];105 my $next_start = $next_exon->start < $next_exon->end ?106 $next_exon->start : $next_exon->end;113 } elsif ($next_exon && !$istart{$stop+1}) {
513 my $next_exon = shift @exons;520 $prev_exon->merge_exon($next_exon);523 push (@new_exons, $next_exon);1007 my $next_exon = shift @exons;1015 $first_exon = $next_exon;1020 my $next_exon = shift @exons;1028 $first_exon = $next_exon;4411 my $next_exon = $exons[$i+1];4412 unless (ref $next_exon) {4427 $next_exon->{CDS_exon_obj} = 0;[all …]
826 const CSpliced_seg::TExons::const_iterator& next_exon) in s_GetSpliceSiteOrientation() argument833 (*next_exon)->GetGenomic_strand() || in s_GetSpliceSiteOrientation()841 !(*next_exon)->IsSetAcceptor_before_exon()) { in s_GetSpliceSiteOrientation()848 string acceptor = (*next_exon)->GetAcceptor_before_exon().GetBases(); in s_GetSpliceSiteOrientation()1246 CSpliced_seg::TExons::const_iterator next_exon(exon); in PrintSAM() local1247 ++next_exon; in PrintSAM()1248 if (next_exon != spliced.GetExons().end()) { in PrintSAM()1249 int query_gap = (*next_exon)->GetProduct_start().GetNucpos() - in PrintSAM()1257 int intron = (*next_exon)->GetGenomic_start() - in PrintSAM()1266 s_GetSpliceSiteOrientation(exon, next_exon)); in PrintSAM()
20760 SeqFeatPtr exon, next_exon, intron; in CompareIntronExonList() local20789 next_exon = vnp_e->data.ptrvalue; in CompareIntronExonList()20790 next_exon_start = SeqLocStart (next_exon->location); in CompareIntronExonList()20791 next_exon_stop = SeqLocStop (next_exon->location); in CompareIntronExonList()20799 ValNodeAddPointer (&problem_list, OBJ_SEQFEAT, next_exon); in CompareIntronExonList()20809 exon = next_exon; in CompareIntronExonList()