Searched refs:next_read_matching (Results 1 – 1 of 1) sorted by relevance
3018 int xk3, next_read_scoring = 0, next_read_matching = 0; in search_window_once() local3029 if(start_read_txt[xk3] == next_read_txt[xk3 - next_read_nonoverlap]) next_read_matching++; in search_window_once()3030 wrong_bases = read_len - next_read_nonoverlap - next_read_matching; in search_window_once()3037 block_context -> total_matched_bases += next_read_matching; in search_window_once()3049 if(next_read_txt[xk3] == start_read_txt[xk3 + next_read_nonoverlap]) next_read_matching++; in search_window_once()3051 wrong_bases = should_match + next_read_nonoverlap - next_read_matching; in search_window_once()3059 block_context -> total_matched_bases += next_read_matching; in search_window_once()