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Searched refs:ngaps (Results 1 – 25 of 39) sorted by relevance

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/dports/science/cdo/cdo-2.0.0/src/
H A DTinfo.cc63 if (ijulinc > 0 && ngaps < MAX_GAPS) in fill_gap()
65 rangetsm[ngaps][0] = tsID; in fill_gap()
66 rangetsm[ngaps][1] = tsID + 1; in fill_gap()
116 ntsm[ngaps] = its; in fill_gap()
134 int ngaps = 0; in Tinfo() local
288 ngaps++; in Tinfo()
326 if (Options::cdoVerbose && ngaps) in Tinfo()
328 … fprintf(stdout, "\nFound potentially %d gap%s in the time series", ngaps, ngaps != 1 ? "s" : ""); in Tinfo()
329 if (ngaps >= MAX_GAPS) in Tinfo()
331 ngaps = MAX_GAPS; in Tinfo()
[all …]
/dports/multimedia/libv4l/linux-5.13-rc2/net/sctp/
H A Dtsnmap.c321 int ngaps = 0; in sctp_tsnmap_num_gabs() local
331 gabs[ngaps].start = htons(start); in sctp_tsnmap_num_gabs()
332 gabs[ngaps].end = htons(end); in sctp_tsnmap_num_gabs()
333 ngaps++; in sctp_tsnmap_num_gabs()
334 if (ngaps >= SCTP_MAX_GABS) in sctp_tsnmap_num_gabs()
338 return ngaps; in sctp_tsnmap_num_gabs()
/dports/multimedia/v4l_compat/linux-5.13-rc2/net/sctp/
H A Dtsnmap.c321 int ngaps = 0; in sctp_tsnmap_num_gabs() local
331 gabs[ngaps].start = htons(start); in sctp_tsnmap_num_gabs()
332 gabs[ngaps].end = htons(end); in sctp_tsnmap_num_gabs()
333 ngaps++; in sctp_tsnmap_num_gabs()
334 if (ngaps >= SCTP_MAX_GABS) in sctp_tsnmap_num_gabs()
338 return ngaps; in sctp_tsnmap_num_gabs()
/dports/multimedia/v4l-utils/linux-5.13-rc2/net/sctp/
H A Dtsnmap.c321 int ngaps = 0; in sctp_tsnmap_num_gabs() local
331 gabs[ngaps].start = htons(start); in sctp_tsnmap_num_gabs()
332 gabs[ngaps].end = htons(end); in sctp_tsnmap_num_gabs()
333 ngaps++; in sctp_tsnmap_num_gabs()
334 if (ngaps >= SCTP_MAX_GABS) in sctp_tsnmap_num_gabs()
338 return ngaps; in sctp_tsnmap_num_gabs()
/dports/biology/infernal/infernal-1.1.3/easel/miniapps/
H A Desl-construct.c97 int *ngaps = NULL; /* number of gaps in each alignment position */ in main() local
404 if((status = get_gaps_per_column(msa, &ngaps)) != eslOK) goto ERROR; in main()
414 …d seqs (%.3f)\n", i, i, j, bp[i][j], msa->nseq - ngaps[i], (float) bp[i][j] / (float) (msa->nseq -… in main()
425 …d seqs (%.3f)\n", i, j, i, bp[j][i], msa->nseq - ngaps[i], (float) bp[j][i] / (float) (msa->nseq -… in main()
692 int *ngaps = NULL; in get_gaps_per_column() local
696 ESL_ALLOC(ngaps, sizeof(int) * (msa->alen+1)); in get_gaps_per_column()
697 esl_vec_ISet(ngaps, msa->alen+1, 0); in get_gaps_per_column()
700 ngaps[apos] += esl_abc_XIsGap(msa->abc, msa->ax[i][apos]); in get_gaps_per_column()
702 *ret_ngaps = ngaps; in get_gaps_per_column()
706 if(ngaps != NULL) free(ngaps); in get_gaps_per_column()
/dports/biology/hmmer/hmmer-3.3/easel/miniapps/
H A Desl-construct.c97 int *ngaps = NULL; /* number of gaps in each alignment position */ in main() local
404 if((status = get_gaps_per_column(msa, &ngaps)) != eslOK) goto ERROR; in main()
414 …d seqs (%.3f)\n", i, i, j, bp[i][j], msa->nseq - ngaps[i], (float) bp[i][j] / (float) (msa->nseq -… in main()
425 …d seqs (%.3f)\n", i, j, i, bp[j][i], msa->nseq - ngaps[i], (float) bp[j][i] / (float) (msa->nseq -… in main()
692 int *ngaps = NULL; in get_gaps_per_column() local
696 ESL_ALLOC(ngaps, sizeof(int) * (msa->alen+1)); in get_gaps_per_column()
697 esl_vec_ISet(ngaps, msa->alen+1, 0); in get_gaps_per_column()
700 ngaps[apos] += esl_abc_XIsGap(msa->abc, msa->ax[i][apos]); in get_gaps_per_column()
702 *ret_ngaps = ngaps; in get_gaps_per_column()
706 if(ngaps != NULL) free(ngaps); in get_gaps_per_column()
/dports/science/nwchem/nwchem-7b21660b82ebd85ef659f6fba7e1e73433b0bd0a/src/peigs/new_src/
H A Dga_pdspev.F57 integer ngaps, hgap, adrgaps
141 ngaps = nprow*npcol
142 if(ngaps.ne.0)status =
143 $ ma_push_get(MT_DBL, ngaps ,'gap',hgap,adrgaps)
320 if ( ngaps.ne.0 ) status = ma_pop_stack(hgap)
/dports/science/nwchem-data/nwchem-7.0.2-release/src/peigs/new_src/
H A Dga_pdspev.F57 integer ngaps, hgap, adrgaps
141 ngaps = nprow*npcol
142 if(ngaps.ne.0)status =
143 $ ma_push_get(MT_DBL, ngaps ,'gap',hgap,adrgaps)
320 if ( ngaps.ne.0 ) status = ma_pop_stack(hgap)
/dports/biology/mothur/mothur-1.46.1/source/uchime_src/
H A Dalignchime.cpp423 unsigned ngaps = 0; in AlignChimeGlobal3() local
425 ++ngaps; in AlignChimeGlobal3()
427 ++ngaps; in AlignChimeGlobal3()
429 ++ngaps; in AlignChimeGlobal3()
433 if (ngaps == 3) in AlignChimeGlobal3()
438 if (ngaps == 2) in AlignChimeGlobal3()
/dports/textproc/htmlise/htmlise-0.2/
H A Dtables.c80 size_t indent, len, ngaps = 0; in paragraph_is_start_of_table() local
100 ++ngaps; in paragraph_is_start_of_table()
104 if (i > 0 && strspn(P->lines[i], "- ") == len && ngaps > 0) in paragraph_is_start_of_table()
/dports/math/py-pandas/pandas-1.2.5/pandas/core/arrays/sparse/
H A Darray.py130 if left.sp_index.ngaps == 0 or right.sp_index.ngaps == 0:
135 if left.sp_index.ngaps == 0:
461 if self.sp_index.ngaps == 0:
741 fcounts = self.sp_index.ngaps
1254 nsparse = self.sp_index.ngaps
1307 nsparse = self.sp_index.ngaps
/dports/science/libssm/ssm-1.4.0/ssm/
H A Dssm_align.cpp92 ngaps = 0; // number of gaps in InitAlign()
230 TMatrix,rmsd,nalgn,ngaps, in align()
294 rmsd,nalgn,ngaps,seqIdentity, in AlignSelectedMatch()
321 f.WriteInt ( &ngaps ); in write()
356 f.ReadInt ( &ngaps ); in read()
H A Dssm_align.h69 int ngaps; //!< number of gaps variable
H A Dssm_superpose.h219 int nres1,nres2,nalgn,ngaps,nmd,nmisdr; variable
/dports/devel/gdb/gdb-11.1/gdb/
H A Dbtrace.h339 unsigned int ngaps; member
/dports/biology/seaview/seaview/
H A Dxfmatpt.cxx1127 int num1, num2, site, need_big_gaps = FALSE, seqrank, num, ngaps, in record_alignment_callback() local
1157 ngaps = matpt->gap_sites[site].l[seqrank]; in record_alignment_callback()
1158 if( ngaps == 0) continue; in record_alignment_callback()
1162 matpt->gap_sites[site].pos - ngaps, ngaps); in record_alignment_callback()
1166 insert_region_part(view, matpt->gap_sites[site].pos - ngaps, in record_alignment_callback()
1167 ngaps); in record_alignment_callback()
/dports/biology/emboss/EMBOSS-6.6.0/nucleus/
H A Dembsig.h132 ajuint ngaps; member
/dports/devel/ga/ga-5.8/global/src/
H A Dscalapack.F2324 integer ngaps, hgap, adrgaps
2431 ngaps = nprow2*npcol2
2432 if(ngaps.ne.0)status =
2433 $ ma_push_get(MT_DBL, ngaps ,'gap',hgap,adrgaps)
2565 if ( ngaps.ne.0 ) status = ma_pop_stack(hgap)
2638 integer ngaps, hgap, adrgaps
2808 ngaps = nprow2*npcol2
2809 if(ngaps.ne.0)status =
2810 $ ma_push_get(MT_DBL, ngaps ,'gap',hgap,adrgaps)
2951 if ( ngaps.ne.0 ) status = ma_pop_stack(hgap)
/dports/devel/py-tables/tables-3.6.1/doc/source/cookbook/
H A Dsimple_table.rst118 ngaps = tables.UInt16Col()
/dports/biology/clustalw/clustalw-2.1/src/alignment/
H A DAlignmentOutput.cpp2244 int ngaps = 0; in findRangeValues() local
2295 ngaps++; in findRangeValues()
2304 ntermgaps = ngaps; in findRangeValues()
2315 << "\n ngaps = " << ngaps << " " in findRangeValues()
2344 iEnd = formula + len - ngaps -1; in findRangeValues()
/dports/www/mimetex/mimetex-20120331.1.74/
H A Dmimetex.c13392 ngaps = 0, /* #gaps in 8 pixels around center */
13417 ngaps = (adjmatrix[7]!=adjmatrix[0]?1:0); /* init count */
13420 ngaps /= 2; /*each gap has 2 black/white flips*/
13425 if ( ngaps <= 2 ) /*don't darken checkerboarded pixel*/
13588 if ( swbitval!=wwbitval ) ngaps++; /* lower-left =? left */
13589 if ( wwbitval!=nwbitval ) ngaps++; /* left =? upper-left */
13590 if ( ngaps > 0 ) ngaps /= 2; /* each gap has 2 bg/fg flips */
13591 if ( ngaps<mingaps || ngaps>maxgaps ) continue;
13764 if ( swbitval!=wwbitval ) ngaps++; /* lower-left =? left */
13766 if ( ngaps > 0 ) ngaps /= 2; /* each gap has 2 bg/fg flips */
[all …]
/dports/graphics/xv-m17n/xv-3.10a/
H A Dxvdir.c327 int i, nbts, ngaps, szdiff, top, gap; local
330 ngaps = nbts-1;
333 gap = szdiff / ngaps;
337 top = dList.y + (dList.h - (nbts*BUTTH) - (ngaps*gap))/2;
343 dbut[i].y = dList.y + ((dList.h-BUTTH)*i) / ngaps;
/dports/japanese/xv/xv-3.10a/
H A Dxvdir.c327 int i, nbts, ngaps, szdiff, top, gap; local
330 ngaps = nbts-1;
333 gap = szdiff / ngaps;
337 top = dList.y + (dList.h - (nbts*BUTTH) - (ngaps*gap))/2;
343 dbut[i].y = dList.y + ((dList.h-BUTTH)*i) / ngaps;
/dports/graphics/xv/xv-3.10a/
H A Dxvdir.c327 int i, nbts, ngaps, szdiff, top, gap; local
330 ngaps = nbts-1;
333 gap = szdiff / ngaps;
337 top = dList.y + (dList.h - (nbts*BUTTH) - (ngaps*gap))/2;
343 dbut[i].y = dList.y + ((dList.h-BUTTH)*i) / ngaps;
/dports/audio/musescore/MuseScore-3.6.1/libmscore/
H A Dlayout.cpp1573 int ngaps { 0 }; in distributeStaves() local
1582 …VerticalGapData* vgd = new VerticalGapData(!ngaps++, system, nullptr, nullptr, nullptr, prevYBotto… in distributeStaves()
1651 --ngaps; in distributeStaves()
1660 while (!almostZero(spaceLeft) && (ngaps > 0) && (++pass < maxPasses)) { in distributeStaves()
1661 ngaps = 0; in distributeStaves()
1682 ++ngaps; in distributeStaves()
1691 ngaps = 0; in distributeStaves()
1701 ngaps = 1; in distributeStaves()
1702 …while (!almostZero(spaceLeft) && !almostZero(maxPageFill) && (ngaps > 0) && (++pass < maxPasses)) { in distributeStaves()
1703 ngaps = 0; in distributeStaves()
[all …]

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