/dports/science/cdo/cdo-2.0.0/src/ |
H A D | Tinfo.cc | 63 if (ijulinc > 0 && ngaps < MAX_GAPS) in fill_gap() 65 rangetsm[ngaps][0] = tsID; in fill_gap() 66 rangetsm[ngaps][1] = tsID + 1; in fill_gap() 116 ntsm[ngaps] = its; in fill_gap() 134 int ngaps = 0; in Tinfo() local 288 ngaps++; in Tinfo() 326 if (Options::cdoVerbose && ngaps) in Tinfo() 328 … fprintf(stdout, "\nFound potentially %d gap%s in the time series", ngaps, ngaps != 1 ? "s" : ""); in Tinfo() 329 if (ngaps >= MAX_GAPS) in Tinfo() 331 ngaps = MAX_GAPS; in Tinfo() [all …]
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/dports/multimedia/libv4l/linux-5.13-rc2/net/sctp/ |
H A D | tsnmap.c | 321 int ngaps = 0; in sctp_tsnmap_num_gabs() local 331 gabs[ngaps].start = htons(start); in sctp_tsnmap_num_gabs() 332 gabs[ngaps].end = htons(end); in sctp_tsnmap_num_gabs() 333 ngaps++; in sctp_tsnmap_num_gabs() 334 if (ngaps >= SCTP_MAX_GABS) in sctp_tsnmap_num_gabs() 338 return ngaps; in sctp_tsnmap_num_gabs()
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/dports/multimedia/v4l_compat/linux-5.13-rc2/net/sctp/ |
H A D | tsnmap.c | 321 int ngaps = 0; in sctp_tsnmap_num_gabs() local 331 gabs[ngaps].start = htons(start); in sctp_tsnmap_num_gabs() 332 gabs[ngaps].end = htons(end); in sctp_tsnmap_num_gabs() 333 ngaps++; in sctp_tsnmap_num_gabs() 334 if (ngaps >= SCTP_MAX_GABS) in sctp_tsnmap_num_gabs() 338 return ngaps; in sctp_tsnmap_num_gabs()
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/dports/multimedia/v4l-utils/linux-5.13-rc2/net/sctp/ |
H A D | tsnmap.c | 321 int ngaps = 0; in sctp_tsnmap_num_gabs() local 331 gabs[ngaps].start = htons(start); in sctp_tsnmap_num_gabs() 332 gabs[ngaps].end = htons(end); in sctp_tsnmap_num_gabs() 333 ngaps++; in sctp_tsnmap_num_gabs() 334 if (ngaps >= SCTP_MAX_GABS) in sctp_tsnmap_num_gabs() 338 return ngaps; in sctp_tsnmap_num_gabs()
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/dports/biology/infernal/infernal-1.1.3/easel/miniapps/ |
H A D | esl-construct.c | 97 int *ngaps = NULL; /* number of gaps in each alignment position */ in main() local 404 if((status = get_gaps_per_column(msa, &ngaps)) != eslOK) goto ERROR; in main() 414 …d seqs (%.3f)\n", i, i, j, bp[i][j], msa->nseq - ngaps[i], (float) bp[i][j] / (float) (msa->nseq -… in main() 425 …d seqs (%.3f)\n", i, j, i, bp[j][i], msa->nseq - ngaps[i], (float) bp[j][i] / (float) (msa->nseq -… in main() 692 int *ngaps = NULL; in get_gaps_per_column() local 696 ESL_ALLOC(ngaps, sizeof(int) * (msa->alen+1)); in get_gaps_per_column() 697 esl_vec_ISet(ngaps, msa->alen+1, 0); in get_gaps_per_column() 700 ngaps[apos] += esl_abc_XIsGap(msa->abc, msa->ax[i][apos]); in get_gaps_per_column() 702 *ret_ngaps = ngaps; in get_gaps_per_column() 706 if(ngaps != NULL) free(ngaps); in get_gaps_per_column()
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/dports/biology/hmmer/hmmer-3.3/easel/miniapps/ |
H A D | esl-construct.c | 97 int *ngaps = NULL; /* number of gaps in each alignment position */ in main() local 404 if((status = get_gaps_per_column(msa, &ngaps)) != eslOK) goto ERROR; in main() 414 …d seqs (%.3f)\n", i, i, j, bp[i][j], msa->nseq - ngaps[i], (float) bp[i][j] / (float) (msa->nseq -… in main() 425 …d seqs (%.3f)\n", i, j, i, bp[j][i], msa->nseq - ngaps[i], (float) bp[j][i] / (float) (msa->nseq -… in main() 692 int *ngaps = NULL; in get_gaps_per_column() local 696 ESL_ALLOC(ngaps, sizeof(int) * (msa->alen+1)); in get_gaps_per_column() 697 esl_vec_ISet(ngaps, msa->alen+1, 0); in get_gaps_per_column() 700 ngaps[apos] += esl_abc_XIsGap(msa->abc, msa->ax[i][apos]); in get_gaps_per_column() 702 *ret_ngaps = ngaps; in get_gaps_per_column() 706 if(ngaps != NULL) free(ngaps); in get_gaps_per_column()
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/dports/science/nwchem/nwchem-7b21660b82ebd85ef659f6fba7e1e73433b0bd0a/src/peigs/new_src/ |
H A D | ga_pdspev.F | 57 integer ngaps, hgap, adrgaps 141 ngaps = nprow*npcol 142 if(ngaps.ne.0)status = 143 $ ma_push_get(MT_DBL, ngaps ,'gap',hgap,adrgaps) 320 if ( ngaps.ne.0 ) status = ma_pop_stack(hgap)
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/dports/science/nwchem-data/nwchem-7.0.2-release/src/peigs/new_src/ |
H A D | ga_pdspev.F | 57 integer ngaps, hgap, adrgaps 141 ngaps = nprow*npcol 142 if(ngaps.ne.0)status = 143 $ ma_push_get(MT_DBL, ngaps ,'gap',hgap,adrgaps) 320 if ( ngaps.ne.0 ) status = ma_pop_stack(hgap)
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/dports/biology/mothur/mothur-1.46.1/source/uchime_src/ |
H A D | alignchime.cpp | 423 unsigned ngaps = 0; in AlignChimeGlobal3() local 425 ++ngaps; in AlignChimeGlobal3() 427 ++ngaps; in AlignChimeGlobal3() 429 ++ngaps; in AlignChimeGlobal3() 433 if (ngaps == 3) in AlignChimeGlobal3() 438 if (ngaps == 2) in AlignChimeGlobal3()
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/dports/textproc/htmlise/htmlise-0.2/ |
H A D | tables.c | 80 size_t indent, len, ngaps = 0; in paragraph_is_start_of_table() local 100 ++ngaps; in paragraph_is_start_of_table() 104 if (i > 0 && strspn(P->lines[i], "- ") == len && ngaps > 0) in paragraph_is_start_of_table()
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/dports/math/py-pandas/pandas-1.2.5/pandas/core/arrays/sparse/ |
H A D | array.py | 130 if left.sp_index.ngaps == 0 or right.sp_index.ngaps == 0: 135 if left.sp_index.ngaps == 0: 461 if self.sp_index.ngaps == 0: 741 fcounts = self.sp_index.ngaps 1254 nsparse = self.sp_index.ngaps 1307 nsparse = self.sp_index.ngaps
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/dports/science/libssm/ssm-1.4.0/ssm/ |
H A D | ssm_align.cpp | 92 ngaps = 0; // number of gaps in InitAlign() 230 TMatrix,rmsd,nalgn,ngaps, in align() 294 rmsd,nalgn,ngaps,seqIdentity, in AlignSelectedMatch() 321 f.WriteInt ( &ngaps ); in write() 356 f.ReadInt ( &ngaps ); in read()
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H A D | ssm_align.h | 69 int ngaps; //!< number of gaps variable
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H A D | ssm_superpose.h | 219 int nres1,nres2,nalgn,ngaps,nmd,nmisdr; variable
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/dports/devel/gdb/gdb-11.1/gdb/ |
H A D | btrace.h | 339 unsigned int ngaps; member
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/dports/biology/seaview/seaview/ |
H A D | xfmatpt.cxx | 1127 int num1, num2, site, need_big_gaps = FALSE, seqrank, num, ngaps, in record_alignment_callback() local 1157 ngaps = matpt->gap_sites[site].l[seqrank]; in record_alignment_callback() 1158 if( ngaps == 0) continue; in record_alignment_callback() 1162 matpt->gap_sites[site].pos - ngaps, ngaps); in record_alignment_callback() 1166 insert_region_part(view, matpt->gap_sites[site].pos - ngaps, in record_alignment_callback() 1167 ngaps); in record_alignment_callback()
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/dports/biology/emboss/EMBOSS-6.6.0/nucleus/ |
H A D | embsig.h | 132 ajuint ngaps; member
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/dports/devel/ga/ga-5.8/global/src/ |
H A D | scalapack.F | 2324 integer ngaps, hgap, adrgaps 2431 ngaps = nprow2*npcol2 2432 if(ngaps.ne.0)status = 2433 $ ma_push_get(MT_DBL, ngaps ,'gap',hgap,adrgaps) 2565 if ( ngaps.ne.0 ) status = ma_pop_stack(hgap) 2638 integer ngaps, hgap, adrgaps 2808 ngaps = nprow2*npcol2 2809 if(ngaps.ne.0)status = 2810 $ ma_push_get(MT_DBL, ngaps ,'gap',hgap,adrgaps) 2951 if ( ngaps.ne.0 ) status = ma_pop_stack(hgap)
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/dports/devel/py-tables/tables-3.6.1/doc/source/cookbook/ |
H A D | simple_table.rst | 118 ngaps = tables.UInt16Col()
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/dports/biology/clustalw/clustalw-2.1/src/alignment/ |
H A D | AlignmentOutput.cpp | 2244 int ngaps = 0; in findRangeValues() local 2295 ngaps++; in findRangeValues() 2304 ntermgaps = ngaps; in findRangeValues() 2315 << "\n ngaps = " << ngaps << " " in findRangeValues() 2344 iEnd = formula + len - ngaps -1; in findRangeValues()
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/dports/www/mimetex/mimetex-20120331.1.74/ |
H A D | mimetex.c | 13392 ngaps = 0, /* #gaps in 8 pixels around center */ 13417 ngaps = (adjmatrix[7]!=adjmatrix[0]?1:0); /* init count */ 13420 ngaps /= 2; /*each gap has 2 black/white flips*/ 13425 if ( ngaps <= 2 ) /*don't darken checkerboarded pixel*/ 13588 if ( swbitval!=wwbitval ) ngaps++; /* lower-left =? left */ 13589 if ( wwbitval!=nwbitval ) ngaps++; /* left =? upper-left */ 13590 if ( ngaps > 0 ) ngaps /= 2; /* each gap has 2 bg/fg flips */ 13591 if ( ngaps<mingaps || ngaps>maxgaps ) continue; 13764 if ( swbitval!=wwbitval ) ngaps++; /* lower-left =? left */ 13766 if ( ngaps > 0 ) ngaps /= 2; /* each gap has 2 bg/fg flips */ [all …]
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/dports/graphics/xv-m17n/xv-3.10a/ |
H A D | xvdir.c | 327 int i, nbts, ngaps, szdiff, top, gap; local 330 ngaps = nbts-1; 333 gap = szdiff / ngaps; 337 top = dList.y + (dList.h - (nbts*BUTTH) - (ngaps*gap))/2; 343 dbut[i].y = dList.y + ((dList.h-BUTTH)*i) / ngaps;
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/dports/japanese/xv/xv-3.10a/ |
H A D | xvdir.c | 327 int i, nbts, ngaps, szdiff, top, gap; local 330 ngaps = nbts-1; 333 gap = szdiff / ngaps; 337 top = dList.y + (dList.h - (nbts*BUTTH) - (ngaps*gap))/2; 343 dbut[i].y = dList.y + ((dList.h-BUTTH)*i) / ngaps;
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/dports/graphics/xv/xv-3.10a/ |
H A D | xvdir.c | 327 int i, nbts, ngaps, szdiff, top, gap; local 330 ngaps = nbts-1; 333 gap = szdiff / ngaps; 337 top = dList.y + (dList.h - (nbts*BUTTH) - (ngaps*gap))/2; 343 dbut[i].y = dList.y + ((dList.h-BUTTH)*i) / ngaps;
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/dports/audio/musescore/MuseScore-3.6.1/libmscore/ |
H A D | layout.cpp | 1573 int ngaps { 0 }; in distributeStaves() local 1582 …VerticalGapData* vgd = new VerticalGapData(!ngaps++, system, nullptr, nullptr, nullptr, prevYBotto… in distributeStaves() 1651 --ngaps; in distributeStaves() 1660 while (!almostZero(spaceLeft) && (ngaps > 0) && (++pass < maxPasses)) { in distributeStaves() 1661 ngaps = 0; in distributeStaves() 1682 ++ngaps; in distributeStaves() 1691 ngaps = 0; in distributeStaves() 1701 ngaps = 1; in distributeStaves() 1702 …while (!almostZero(spaceLeft) && !almostZero(maxPageFill) && (ngaps > 0) && (++pass < maxPasses)) { in distributeStaves() 1703 ngaps = 0; in distributeStaves() [all …]
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