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Searched refs:ni_total (Results 1 – 22 of 22) sorted by relevance

/dports/biology/gemma/GEMMA-0.98.3/src/
H A Dgemma_io.cpp903 if (ni_total % 4 == 0) { in ReadFile_bed()
904 n_bit = ni_total / 4; in ReadFile_bed()
1107 if (ni_total % 4 == 0) { in Plink_ReadOneSNP()
1108 n_bit = ni_total / 4; in Plink_ReadOneSNP()
1611 n_bit = ni_total / 4; in PlinkKin()
1959 n_bit = ni_total / 4; in ReadFile_bed()
2095 n_bit = ni_total / 4; in ReadFile_bed()
2982 n_bit = ni_total / 4; in PlinkKin()
3357 ni_total = 0; in ReadFile_beta()
3523 ni_total = max(ni_total, n_total); in ReadFile_beta()
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H A Dldr.cpp58 ni_total = cPar.ni_total; in CopyFromParam()
H A Dlm.cpp61 ni_total = cPar.ni_total; in CopyFromParam()
438 for (size_t i = 0; i < ni_total; ++i) { in AnalyzeBimbam()
536 if (ni_total % 4 == 0) { in AnalyzePlink()
537 n_bit = ni_total / 4; in AnalyzePlink()
539 n_bit = ni_total / 4 + 1; in AnalyzePlink()
570 if ((i == (n_bit - 1)) && ci_total == (int)ni_total) { in AnalyzePlink()
H A Dvc.cpp76 ni_total = cPar.ni_total; in CopyFromParam()
105 cPar.ni_total = ni_total; in CopyToParam()
777 ni_total = max(ni_total, n_total); in ReadFile_cor()
815 ni_total = 0; in ReadFile_beta()
978 ni_total = max(ni_total, n_total); in ReadFile_beta()
1055 ni_total = 0; in ReadFile_cor()
1210 ni_total = max(ni_total, n_total); in ReadFile_cor()
2341 if (ni_total % 4 == 0) { in PlinkXwz()
2342 n_bit = ni_total / 4; in PlinkXwz()
2591 if (ni_total % 4 == 0) { in PlinkXtXwz()
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H A Dprdt.cpp134 size_t ni_test = u_hat->size, ni_total = G->size1; in AddBV() local
137 gsl_matrix *Gfo = gsl_matrix_alloc(ni_total - ni_test, ni_test); in AddBV()
141 gsl_vector *w = gsl_vector_alloc(ni_total); in AddBV()
145 for (size_t i = 0; i < ni_total; i++) { in AddBV()
H A Dldr.h43 size_t ni_total, ns_total; // Total number of individuals & SNPs. variable
H A Dlm.h45 size_t ni_total, ni_test; // Number of individuals. variable
H A Dlmm.cpp72 ni_total = cPar.ni_total; in CopyFromParam()
1582 for (size_t i = 0; i < ni_total; ++i) { in Analyze()
1660 gs.resize(ni_total); in AnalyzeBimbam()
1679 for (size_t i = 0; i < ni_total; ++i) { in AnalyzeBimbam()
1737 if (ni_total % 4 == 0) { in AnalyzePlink()
1738 n_bit = ni_total / 4; in AnalyzePlink()
1740 n_bit = ni_total / 4 + 1; in AnalyzePlink()
2285 for (size_t i = 0; i < ni_total; ++i) { in AnalyzeBimbamGXE()
2417 if (ni_total % 4 == 0) { in AnalyzePlinkGXE()
2418 n_bit = ni_total / 4; in AnalyzePlinkGXE()
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H A Dmvlmm.h58 size_t ni_total, ni_test; // Number of individuals. variable
H A Dbslmmdap.h53 size_t ni_total, ns_total; // Number of total individuals and SNPs. variable
H A Dlmm.h71 size_t ni_total, ni_test; // Number of individuals. variable
H A Dvc.h62 size_t ni_total, ns_total, ns_test; variable
H A Dbslmm.h70 size_t ni_total, ns_total; // Number of total individuals and SNPs variable
H A Dgemma.cpp1660 y_prdt = gsl_vector_safe_alloc(cPar.ni_total - cPar.ni_test); in BatchRun()
1672 gsl_matrix *G = gsl_matrix_safe_alloc(cPar.ni_total, cPar.ni_total); in BatchRun()
1898 gsl_matrix *G = gsl_matrix_safe_alloc(cPar.ni_total, cPar.ni_total); in BatchRun()
2014 vec_weight, vec_z2, cPar.ni_total, cPar.ns_total, in BatchRun()
2016 cout << "## number of total individuals = " << cPar.ni_total << endl; in BatchRun()
2030 gsl_vector_set(s, cPar.n_vc, cPar.ni_total); in BatchRun()
3231 << cPar.ni_total << endl; in WriteLog()
3241 << cPar.ni_total << endl; in WriteLog()
3290 outfile << "## number of total individuals = " << cPar.ni_total << endl; in WriteLog()
H A Dparam.h233 size_t ni_total, ni_test, ni_cvt, ni_study, ni_ref; variable
H A Dgemma_io.h164 vector<double> &vec_z2, size_t &ni_total, size_t &ns_total,
H A Dbslmmdap.cpp81 ni_total = cPar.ni_total; in CopyFromParam()
H A Dmvlmm.cpp78 ni_total = cPar.ni_total; in CopyFromParam()
3226 for (size_t i = 0; i < ni_total; ++i) { in AnalyzeBimbam()
3649 if (ni_total % 4 == 0) { in AnalyzePlink()
3650 n_bit = ni_total / 4; in AnalyzePlink()
3652 n_bit = ni_total / 4 + 1; in AnalyzePlink()
3690 if ((i == (n_bit - 1)) && ci_total == (int)ni_total) { in AnalyzePlink()
4212 for (size_t i = 0; i < ni_total; ++i) { in AnalyzeBimbamGXE()
4641 if (ni_total % 4 == 0) { in AnalyzePlinkGXE()
4642 n_bit = ni_total / 4; in AnalyzePlinkGXE()
4644 n_bit = ni_total / 4 + 1; in AnalyzePlinkGXE()
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H A Dbslmm.cpp91 ni_total = cPar.ni_total; in CopyFromParam()
128 for (size_t i = 0; i < ni_total; ++i) { in WriteBV()
H A Dparam.cpp1031 ni_total = (indicator_idv).size(); in CheckData()
1106 cout << "## number of total individuals = " << ni_total << endl; in CheckData()
/dports/comms/gnuradio/gnuradio-3.8.4.0/gr-blocks/lib/
H A Dskiphead_impl.cc68 uint64_t ni_total = ii + d_nitems; // total items processed so far in general_work() local
69 if (ni_total < d_nitems_to_skip) { // need to skip some more in general_work()
72 (int)std::min(d_nitems_to_skip - ni_total, (uint64_t)(ninput_items - ii)); in general_work()
/dports/science/py-gpaw/gpaw-21.6.0/gpaw/wavefunctions/
H A Dlcao.py964 ni_total = sum([setup.ni for setup in self.setups])
969 mem.subnode('P [aqMi]', nq * nao * ni_total // self.gd.comm.size)