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Searched refs:nmixture (Results 1 – 7 of 7) sorted by relevance

/dports/biology/iqtree/IQ-TREE-2.0.6/tree/
H A Dphylokernelmixture.h56 size_t block = statecat * nmixture; in computeMixturePartialLikelihoodEigenSIMD()
99 for (m = 0; m < nmixture; m++) { in computeMixturePartialLikelihoodEigenSIMD()
118 for (m = 0; m < nmixture; m++) { in computeMixturePartialLikelihoodEigenSIMD()
150 for (m = 0; m < nmixture; m++) { in computeMixturePartialLikelihoodEigenSIMD()
174 for (m = 0; m < nmixture; m++) { in computeMixturePartialLikelihoodEigenSIMD()
269 for (m = 0; m < nmixture; m++) { in computeMixturePartialLikelihoodEigenSIMD()
319 for (m = 0; m < nmixture; m++) in computeMixturePartialLikelihoodEigenSIMD()
396 for (m = 0; m < nmixture; m++) in computeMixturePartialLikelihoodEigenSIMD()
504 for (m = 0; m < nmixture; m++) { in computeMixtureLikelihoodDervEigenSIMD()
765 for (m = 0; m < nmixture; m++) { in computeMixtureLikelihoodBranchEigenSIMD()
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H A Dphylotree.cpp1364 lh_res += nmixture; in computePatternLhCat()
1402 for (m = 0; m < nmixture; m++) { in computePatternStateFreq()
1406 for (m = 0; m < nmixture; m++) { in computePatternStateFreq()
1419 lh_cat += nmixture; in computePatternStateFreq()
1429 for (m = 1; m < nmixture; m++) in computePatternStateFreq()
1438 lh_cat += nmixture; in computePatternStateFreq()
1624 size_t nmixture; in computePatternCategories() local
1628 nmixture = ncat; in computePatternCategories()
1642 int *id_mixture = new int[nmixture]; in computePatternCategories()
1670 lh_cat += nmixture; in computePatternCategories()
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H A Dphylotreemixlen.cpp769 size_t nmixture = model->getNMixtures(); in computeFuncDerv() local
771 size_t block = ncat * nstates * nmixture; in computeFuncDerv()
772 size_t statemix = nstates * nmixture; in computeFuncDerv()
798 for (m = 0; m < nmixture; m++) { in computeFuncDerv()
/dports/science/sparta/sparta-20Oct2021/src/
H A Dparticle.cpp71 nmixture = maxmixture = 0; in Particle()
967 if (nmixture == maxmixture) { in add_mixture()
973 imix = nmixture; in add_mixture()
999 for (int i = 0; i < nmixture; i++) in find_mixture()
1343 fwrite(&nmixture,sizeof(int),1,fp); in write_restart_mixture()
1344 for (int i = 0; i < nmixture; i++) { in write_restart_mixture()
1362 nmixture = 0; in read_restart_mixture()
1366 if (me == 0) fread(&nmixture,sizeof(int),1,fp); in read_restart_mixture()
1367 MPI_Bcast(&nmixture,1,MPI_INT,0,world); in read_restart_mixture()
1369 if (nmixture > maxmixture) { in read_restart_mixture()
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H A Dparticle.h64 int nmixture; variable
H A Dmixture.cpp179 particle->mixture[particle->nmixture-1]->copy(this); in command()
/dports/science/sparta/sparta-20Oct2021/src/KOKKOS/
H A Dparticle_kokkos.cpp625 k_species2group = DAT::tdual_int_2d("particle:species2group",nmixture,nspecies); in wrap_kokkos()
626 for (int i = 0; i < nmixture; i++) in wrap_kokkos()