Searched refs:nmixture (Results 1 – 7 of 7) sorted by relevance
/dports/biology/iqtree/IQ-TREE-2.0.6/tree/ |
H A D | phylokernelmixture.h | 56 size_t block = statecat * nmixture; in computeMixturePartialLikelihoodEigenSIMD() 99 for (m = 0; m < nmixture; m++) { in computeMixturePartialLikelihoodEigenSIMD() 118 for (m = 0; m < nmixture; m++) { in computeMixturePartialLikelihoodEigenSIMD() 150 for (m = 0; m < nmixture; m++) { in computeMixturePartialLikelihoodEigenSIMD() 174 for (m = 0; m < nmixture; m++) { in computeMixturePartialLikelihoodEigenSIMD() 269 for (m = 0; m < nmixture; m++) { in computeMixturePartialLikelihoodEigenSIMD() 319 for (m = 0; m < nmixture; m++) in computeMixturePartialLikelihoodEigenSIMD() 396 for (m = 0; m < nmixture; m++) in computeMixturePartialLikelihoodEigenSIMD() 504 for (m = 0; m < nmixture; m++) { in computeMixtureLikelihoodDervEigenSIMD() 765 for (m = 0; m < nmixture; m++) { in computeMixtureLikelihoodBranchEigenSIMD() [all …]
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H A D | phylotree.cpp | 1364 lh_res += nmixture; in computePatternLhCat() 1402 for (m = 0; m < nmixture; m++) { in computePatternStateFreq() 1406 for (m = 0; m < nmixture; m++) { in computePatternStateFreq() 1419 lh_cat += nmixture; in computePatternStateFreq() 1429 for (m = 1; m < nmixture; m++) in computePatternStateFreq() 1438 lh_cat += nmixture; in computePatternStateFreq() 1624 size_t nmixture; in computePatternCategories() local 1628 nmixture = ncat; in computePatternCategories() 1642 int *id_mixture = new int[nmixture]; in computePatternCategories() 1670 lh_cat += nmixture; in computePatternCategories() [all …]
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H A D | phylotreemixlen.cpp | 769 size_t nmixture = model->getNMixtures(); in computeFuncDerv() local 771 size_t block = ncat * nstates * nmixture; in computeFuncDerv() 772 size_t statemix = nstates * nmixture; in computeFuncDerv() 798 for (m = 0; m < nmixture; m++) { in computeFuncDerv()
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/dports/science/sparta/sparta-20Oct2021/src/ |
H A D | particle.cpp | 71 nmixture = maxmixture = 0; in Particle() 967 if (nmixture == maxmixture) { in add_mixture() 973 imix = nmixture; in add_mixture() 999 for (int i = 0; i < nmixture; i++) in find_mixture() 1343 fwrite(&nmixture,sizeof(int),1,fp); in write_restart_mixture() 1344 for (int i = 0; i < nmixture; i++) { in write_restart_mixture() 1362 nmixture = 0; in read_restart_mixture() 1366 if (me == 0) fread(&nmixture,sizeof(int),1,fp); in read_restart_mixture() 1367 MPI_Bcast(&nmixture,1,MPI_INT,0,world); in read_restart_mixture() 1369 if (nmixture > maxmixture) { in read_restart_mixture() [all …]
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H A D | particle.h | 64 int nmixture; variable
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H A D | mixture.cpp | 179 particle->mixture[particle->nmixture-1]->copy(this); in command()
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/dports/science/sparta/sparta-20Oct2021/src/KOKKOS/ |
H A D | particle_kokkos.cpp | 625 k_species2group = DAT::tdual_int_2d("particle:species2group",nmixture,nspecies); in wrap_kokkos() 626 for (int i = 0; i < nmixture; i++) in wrap_kokkos()
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