Searched refs:nniType (Results 1 – 4 of 4) sorted by relevance
| /dports/biology/iqtree/IQ-TREE-2.0.6/utils/ |
| H A D | pllnni.cpp | 117 int nniType = random_int(2); in pllDoRandomNNIs() local
118 doOneNNI(tr, pr, (*it), nniType, TOPO_ONLY); in pllDoRandomNNIs()
154 doOneNNI(tr, pr, (*it).p, (*it).nniType, TOPO_ONLY); in pllPerturbTree()
345 doOneNNI(tr, pr, (*it).p, (*it).nniType, TOPO_ONLY); in pllDoNNISearch()
384 doOneNNI(tr, pr, (*rit).p, (*rit).nniType, TOPO_ONLY); in pllDoNNISearch()
685 nni0.nniType = 0; in evalNNIForBran()
703 nni1.nniType = 0; in evalNNIForBran()
740 nni2.nniType = 1; in evalNNIForBran()
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| H A D | pllnni.h | 41 int nniType; member
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| /dports/biology/iqtree/IQ-TREE-2.0.6/pll/ |
| H A D | searchAlgo.c | 1776 nni0.nniType = 0; in getBestNNIForBran()
1794 nni1.nniType = 1; in getBestNNIForBran()
1833 nni2.nniType = 2; in getBestNNIForBran()
1967 pllTopologyPerformNNI(tr, nonConfNNIList[i].p, nonConfNNIList[i].nniType); in pllNniSearch()
1992 pllTopologyPerformNNI(tr, nonConfNNIList[i].p, nonConfNNIList[i].nniType); in pllNniSearch()
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| H A D | pll.h | 1269 int nniType; member
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