Searched refs:nonObservedShiftIndex (Results 1 – 1 of 1) sorted by relevance
466 int nonObservedShiftIndex = 0, pdbeNonObserved = 0; in getGreedyMapping() local497 omitNonObserved, nonObservedShiftIndex, pdbeNonObserved); in getGreedyMapping()630 int nonObservedShiftIndex = shp.getNonObservedShiftIndex();697 ++nonObservedShiftIndex;733 mapping.put(currSeqIndex - nonObservedShiftIndex, mappingcols);1022 private int nonObservedShiftIndex; field in SiftsClient.SegmentHelperPojo1033 List<Integer> omitNonObserved, int nonObservedShiftIndex, in SegmentHelperPojo() argument1040 setNonObservedShiftIndex(nonObservedShiftIndex); in SegmentHelperPojo()1097 return nonObservedShiftIndex; in getNonObservedShiftIndex()1100 public void setNonObservedShiftIndex(int nonObservedShiftIndex) in setNonObservedShiftIndex() argument[all …]