Searched refs:nonUniqueKmers (Results 1 – 1 of 1) sorted by relevance
30 protected Set<Kmer> nonUniqueKmers; field in ReadThreadingGraph52 nonUniqueKmers = null; in ReadThreadingGraph()61 nonUniqueKmers = null; in ReadThreadingGraph()85 return nonUniqueKmers.size() * 4 > kmerToVertexMap.size(); in isLowQualityGraph()123 final Set<Kmer> nonUniqueKmers = new HashSet<>(); in determineNonUniques() local137 nonUniqueKmers.addAll(nonUniquesFromSeq); in determineNonUniques()141 return nonUniqueKmers; in determineNonUniques()161 final List<Kmer> nonUniqueKmers = new ArrayList<>(); in determineNonUniqueKmers() local166 nonUniqueKmers.add(kmer); in determineNonUniqueKmers()169 return nonUniqueKmers; in determineNonUniqueKmers()[all …]