/dports/biology/infernal/infernal-1.1.3/hmmer/src/ |
H A D | evalues.c | 244 float sc, nullsc; in p7_MSVMu() local 258 if ((status = p7_bg_NullOne(bg, dsq, L, &nullsc)) != eslOK) goto ERROR; in p7_MSVMu() 264 xv[i] = (sc - nullsc) / eslCONST_LOG2; in p7_MSVMu() 313 float sc, nullsc; in p7_ViterbiMu() local 327 if ((status = p7_bg_NullOne(bg, dsq, L, &nullsc)) != eslOK) goto ERROR; in p7_ViterbiMu() 333 xv[i] = (sc - nullsc) / eslCONST_LOG2; in p7_ViterbiMu() 417 float fsc, nullsc; in p7_Tau() local 433 if ((status = p7_bg_NullOne(bg, dsq, L, &nullsc)) != eslOK) goto ERROR; in p7_Tau() 434 xv[i] = (fsc - nullsc) / eslCONST_LOG2; in p7_Tau()
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H A D | p7_pipeline.c | 690 p7_bg_NullOne (bg, sq->dsq, sq->n, &nullsc); in p7_Pipeline() 694 seq_score = (usc - nullsc) / eslCONST_LOG2; in p7_Pipeline() 707 else filtersc = nullsc; in p7_Pipeline() 754 pre_score = (fwdsc - nullsc) / eslCONST_LOG2; in p7_Pipeline() 755 seq_score = (fwdsc - (nullsc + seqbias)) / eslCONST_LOG2; in p7_Pipeline() 1045 float nullsc; in p7_pli_postViterbi_LongTarget() local 1065 p7_bg_NullOne (bg, subseq, window_len, &nullsc); in p7_pli_postViterbi_LongTarget() 1163 dom_score = (bitscore - (nullsc)) / eslCONST_LOG2; in p7_pli_postViterbi_LongTarget() 1346 p7_bg_NullOne (bg, subseq, loc_window_len, &nullsc); in p7_pli_postSSV_LongTarget() 1605 p7_bg_NullOne (bg, subseq, window->length, &nullsc); in p7_Pipeline_LongTarget() [all …]
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H A D | p7_bg.c | 474 …float nullsc; /* (or it could be passed in as an arg, but for sure it shouldn… in p7_bg_FilterScore() local 476 esl_hmm_Forward(dsq, L, bg->fhmm, hmx, &nullsc); in p7_bg_FilterScore() 479 *ret_sc = nullsc + (float) L * logf(bg->p1) + logf(1.-bg->p1); in p7_bg_FilterScore() 675 float nullsc, filtersc, H; in main() local 704 p7_bg_NullOne (bg, sq->dsq, sq->n, &nullsc); in main() 707 … printf("%-20s %5d %8.5f %8.5f %8.5f\n", sq->name, (int) sq->n, nullsc, filtersc, filtersc-nullsc); in main()
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H A D | generic_fwdback.c | 458 float vsc, nullsc; in utest_forward() local 475 if (p7_bg_NullOne(bg, dsq, L, &nullsc) != eslOK) esl_fatal("null score failed"); in utest_forward() 477 avg_sc += fsc - nullsc; in utest_forward() 503 float vsc, fsc, nullsc, tracesc; in utest_generation() local 516 if (p7_bg_NullOne(bg, sq->dsq, sq->n, &nullsc) != eslOK) esl_fatal("null score failed"); in utest_generation() 525 avg_fsc += (fsc - nullsc); in utest_generation() 741 float nullsc; in main() local 799 p7_bg_NullOne(bg, sq->dsq, sq->n, &nullsc); in main() 804 (fsc - nullsc) / eslCONST_LOG2, (bsc - nullsc) / eslCONST_LOG2); in main()
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H A D | modelstats.c | 111 float nullsc; in p7_MeanForwardScore() local 124 …if (p7_bg_NullOne(bg, sq->dsq, sq->n, &nullsc) != eslOK) p7_Die("failed to run bg_NullOne()"); in p7_MeanForwardScore() 125 bitscore = (fsc - nullsc) / eslCONST_LOG2; in p7_MeanForwardScore()
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H A D | generic_msv.c | 171 float nullsc; in p7_GMSV_longtarget() local 194 p7_bg_NullOne (bg, dsq, gm->max_length, &nullsc); in p7_GMSV_longtarget() 196 sc_thresh = nullsc + (invP * eslCONST_LOG2) - tmove - tloop_total; in p7_GMSV_longtarget() 510 float sc, nullsc, seqscore, lnP; in main() local 544 p7_bg_NullOne (bg, sq->dsq, sq->n, &nullsc); in main() 545 seqscore = (sc - nullsc) / eslCONST_LOG2; in main()
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/dports/biology/hmmer/hmmer-3.3/src/ |
H A D | evalues.c | 244 float sc, nullsc; in p7_MSVMu() local 258 if ((status = p7_bg_NullOne(bg, dsq, L, &nullsc)) != eslOK) goto ERROR; in p7_MSVMu() 264 xv[i] = (sc - nullsc) / eslCONST_LOG2; in p7_MSVMu() 313 float sc, nullsc; in p7_ViterbiMu() local 327 if ((status = p7_bg_NullOne(bg, dsq, L, &nullsc)) != eslOK) goto ERROR; in p7_ViterbiMu() 333 xv[i] = (sc - nullsc) / eslCONST_LOG2; in p7_ViterbiMu() 417 float fsc, nullsc; in p7_Tau() local 433 if ((status = p7_bg_NullOne(bg, dsq, L, &nullsc)) != eslOK) goto ERROR; in p7_Tau() 434 xv[i] = (fsc - nullsc) / eslCONST_LOG2; in p7_Tau()
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H A D | p7_pipeline.c | 690 p7_bg_NullOne (bg, sq->dsq, sq->n, &nullsc); in p7_Pipeline() 694 seq_score = (usc - nullsc) / eslCONST_LOG2; in p7_Pipeline() 707 else filtersc = nullsc; in p7_Pipeline() 754 pre_score = (fwdsc - nullsc) / eslCONST_LOG2; in p7_Pipeline() 755 seq_score = (fwdsc - (nullsc + seqbias)) / eslCONST_LOG2; in p7_Pipeline() 1045 float nullsc; in p7_pli_postViterbi_LongTarget() local 1065 p7_bg_NullOne (bg, subseq, window_len, &nullsc); in p7_pli_postViterbi_LongTarget() 1163 dom_score = (bitscore - (nullsc)) / eslCONST_LOG2; in p7_pli_postViterbi_LongTarget() 1346 p7_bg_NullOne (bg, subseq, loc_window_len, &nullsc); in p7_pli_postSSV_LongTarget() 1605 p7_bg_NullOne (bg, subseq, window->length, &nullsc); in p7_Pipeline_LongTarget() [all …]
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H A D | p7_bg.c | 474 …float nullsc; /* (or it could be passed in as an arg, but for sure it shouldn… in p7_bg_FilterScore() local 476 esl_hmm_Forward(dsq, L, bg->fhmm, hmx, &nullsc); in p7_bg_FilterScore() 479 *ret_sc = nullsc + (float) L * logf(bg->p1) + logf(1.-bg->p1); in p7_bg_FilterScore() 675 float nullsc, filtersc, H; in main() local 704 p7_bg_NullOne (bg, sq->dsq, sq->n, &nullsc); in main() 707 … printf("%-20s %5d %8.5f %8.5f %8.5f\n", sq->name, (int) sq->n, nullsc, filtersc, filtersc-nullsc); in main()
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H A D | generic_fwdback.c | 458 float vsc, nullsc; in utest_forward() local 475 if (p7_bg_NullOne(bg, dsq, L, &nullsc) != eslOK) esl_fatal("null score failed"); in utest_forward() 477 avg_sc += fsc - nullsc; in utest_forward() 503 float vsc, fsc, nullsc, tracesc; in utest_generation() local 516 if (p7_bg_NullOne(bg, sq->dsq, sq->n, &nullsc) != eslOK) esl_fatal("null score failed"); in utest_generation() 525 avg_fsc += (fsc - nullsc); in utest_generation() 741 float nullsc; in main() local 799 p7_bg_NullOne(bg, sq->dsq, sq->n, &nullsc); in main() 804 (fsc - nullsc) / eslCONST_LOG2, (bsc - nullsc) / eslCONST_LOG2); in main()
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H A D | modelstats.c | 111 float nullsc; in p7_MeanForwardScore() local 124 …if (p7_bg_NullOne(bg, sq->dsq, sq->n, &nullsc) != eslOK) p7_Die("failed to run bg_NullOne()"); in p7_MeanForwardScore() 125 bitscore = (fsc - nullsc) / eslCONST_LOG2; in p7_MeanForwardScore()
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H A D | generic_msv.c | 171 float nullsc; in p7_GMSV_longtarget() local 194 p7_bg_NullOne (bg, dsq, gm->max_length, &nullsc); in p7_GMSV_longtarget() 196 sc_thresh = nullsc + (invP * eslCONST_LOG2) - tmove - tloop_total; in p7_GMSV_longtarget() 510 float sc, nullsc, seqscore, lnP; in main() local 544 p7_bg_NullOne (bg, sq->dsq, sq->n, &nullsc); in main() 545 seqscore = (sc - nullsc) / eslCONST_LOG2; in main()
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/dports/biology/infernal/infernal-1.1.3/hmmer/src/impl_sse/ |
H A D | msvfilter.c | 309 float nullsc; in p7_SSVFilter_longtarget() local 322 p7_bg_NullOne (bg, dsq, om->max_length, &nullsc); in p7_SSVFilter_longtarget() 324 …sc_thresh = (int) ceil( ( ( nullsc + (invP * eslCONST_LOG2) + 3.0 ) * om->scale_b ) + om->base_b… in p7_SSVFilter_longtarget() 780 float msvraw, nullsc, msvscore; in main() local 827 p7_bg_NullOne (bg, sq->dsq, sq->n, &nullsc); in main() 828 msvscore = (msvraw - nullsc) / eslCONST_LOG2; in main() 832 gscore = (graw - nullsc) / eslCONST_LOG2; in main() 847 printf("null score: %.2f nats\n", nullsc); in main()
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H A D | vitfilter.c | 823 float vfraw, nullsc, vfscore; in main() local 867 p7_bg_NullOne (bg, sq->dsq, sq->n, &nullsc); in main() 868 vfscore = (vfraw - nullsc) / eslCONST_LOG2; in main() 872 gscore = (graw - nullsc) / eslCONST_LOG2; in main() 887 printf("null score: %.2f nats\n", nullsc); in main()
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/dports/biology/infernal/infernal-1.1.3/hmmer/src/impl_vmx/ |
H A D | msvfilter.c | 298 float nullsc; in p7_SSVFilter_longtarget() local 310 p7_bg_NullOne (bg, dsq, om->max_length, &nullsc); in p7_SSVFilter_longtarget() 312 …sc_thresh = (int) ceil( ( ( nullsc + (invP * eslCONST_LOG2) + 3.0 ) * om->scale_b ) + om->base_b… in p7_SSVFilter_longtarget() 766 float msvraw, nullsc, msvscore; in main() local 812 p7_bg_NullOne (bg, sq->dsq, sq->n, &nullsc); in main() 813 msvscore = (msvraw - nullsc) / eslCONST_LOG2; in main() 817 gscore = (graw - nullsc) / eslCONST_LOG2; in main() 832 printf("null score: %.2f nats\n", nullsc); in main()
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H A D | vitfilter.c | 819 float vfraw, nullsc, vfscore; in main() local 863 p7_bg_NullOne (bg, sq->dsq, sq->n, &nullsc); in main() 864 vfscore = (vfraw - nullsc) / eslCONST_LOG2; in main() 868 gscore = (graw - nullsc) / eslCONST_LOG2; in main() 883 printf("null score: %.2f nats\n", nullsc); in main()
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/dports/biology/hmmer/hmmer-3.3/src/impl_sse/ |
H A D | msvfilter.c | 309 float nullsc; in p7_SSVFilter_longtarget() local 322 p7_bg_NullOne (bg, dsq, om->max_length, &nullsc); in p7_SSVFilter_longtarget() 324 …sc_thresh = (int) ceil( ( ( nullsc + (invP * eslCONST_LOG2) + 3.0 ) * om->scale_b ) + om->base_b… in p7_SSVFilter_longtarget() 780 float msvraw, nullsc, msvscore; in main() local 827 p7_bg_NullOne (bg, sq->dsq, sq->n, &nullsc); in main() 828 msvscore = (msvraw - nullsc) / eslCONST_LOG2; in main() 832 gscore = (graw - nullsc) / eslCONST_LOG2; in main() 847 printf("null score: %.2f nats\n", nullsc); in main()
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H A D | vitfilter.c | 823 float vfraw, nullsc, vfscore; in main() local 867 p7_bg_NullOne (bg, sq->dsq, sq->n, &nullsc); in main() 868 vfscore = (vfraw - nullsc) / eslCONST_LOG2; in main() 872 gscore = (graw - nullsc) / eslCONST_LOG2; in main() 887 printf("null score: %.2f nats\n", nullsc); in main()
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/dports/biology/hmmer/hmmer-3.3/src/impl_vmx/ |
H A D | msvfilter.c | 298 float nullsc; in p7_SSVFilter_longtarget() local 310 p7_bg_NullOne (bg, dsq, om->max_length, &nullsc); in p7_SSVFilter_longtarget() 312 …sc_thresh = (int) ceil( ( ( nullsc + (invP * eslCONST_LOG2) + 3.0 ) * om->scale_b ) + om->base_b… in p7_SSVFilter_longtarget() 766 float msvraw, nullsc, msvscore; in main() local 812 p7_bg_NullOne (bg, sq->dsq, sq->n, &nullsc); in main() 813 msvscore = (msvraw - nullsc) / eslCONST_LOG2; in main() 817 gscore = (graw - nullsc) / eslCONST_LOG2; in main() 832 printf("null score: %.2f nats\n", nullsc); in main()
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/dports/biology/infernal/infernal-1.1.3/easel/ |
H A D | esl_hmm.c | 767 float fwdsc, nullsc; in main() local 780 esl_hmm_Forward(sq->dsq, sq->n, bg, hmx, &nullsc); in main() 784 nullsc * eslCONST_LOG2R, (nullsc * eslCONST_LOG2R) / sq->n, in main() 785 (fwdsc - nullsc) * eslCONST_LOG2R, (fwdsc-nullsc) * eslCONST_LOG2R / sq->n); in main()
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/dports/biology/hmmer/hmmer-3.3/easel/ |
H A D | esl_hmm.c | 767 float fwdsc, nullsc; in main() local 780 esl_hmm_Forward(sq->dsq, sq->n, bg, hmx, &nullsc); in main() 784 nullsc * eslCONST_LOG2R, (nullsc * eslCONST_LOG2R) / sq->n, in main() 785 (fwdsc - nullsc) * eslCONST_LOG2R, (fwdsc-nullsc) * eslCONST_LOG2R / sq->n); in main()
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/dports/net/openldap25-server/openldap-2.5.9/contrib/slapd-modules/rbac/ |
H A D | init.c | 31 static slap_callback nullsc = { NULL, NULL, NULL, NULL }; variable 198 op2->o_callback = &nullsc; in initialize_tenant()
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/dports/net/openldap25-client/openldap-2.5.9/contrib/slapd-modules/rbac/ |
H A D | init.c | 31 static slap_callback nullsc = { NULL, NULL, NULL, NULL }; variable 198 op2->o_callback = &nullsc; in initialize_tenant()
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/dports/net/openldap26-client/openldap-2.6.0/contrib/slapd-modules/rbac/ |
H A D | init.c | 31 static slap_callback nullsc = { NULL, NULL, NULL, NULL }; variable 198 op2->o_callback = &nullsc; in initialize_tenant()
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/dports/net/openldap26-server/openldap-2.6.0/contrib/slapd-modules/rbac/ |
H A D | init.c | 31 static slap_callback nullsc = { NULL, NULL, NULL, NULL }; variable 198 op2->o_callback = &nullsc; in initialize_tenant()
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