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/dports/biology/infernal/infernal-1.1.3/hmmer/src/
H A Devalues.c244 float sc, nullsc; in p7_MSVMu() local
258 if ((status = p7_bg_NullOne(bg, dsq, L, &nullsc)) != eslOK) goto ERROR; in p7_MSVMu()
264 xv[i] = (sc - nullsc) / eslCONST_LOG2; in p7_MSVMu()
313 float sc, nullsc; in p7_ViterbiMu() local
327 if ((status = p7_bg_NullOne(bg, dsq, L, &nullsc)) != eslOK) goto ERROR; in p7_ViterbiMu()
333 xv[i] = (sc - nullsc) / eslCONST_LOG2; in p7_ViterbiMu()
417 float fsc, nullsc; in p7_Tau() local
433 if ((status = p7_bg_NullOne(bg, dsq, L, &nullsc)) != eslOK) goto ERROR; in p7_Tau()
434 xv[i] = (fsc - nullsc) / eslCONST_LOG2; in p7_Tau()
H A Dp7_pipeline.c690 p7_bg_NullOne (bg, sq->dsq, sq->n, &nullsc); in p7_Pipeline()
694 seq_score = (usc - nullsc) / eslCONST_LOG2; in p7_Pipeline()
707 else filtersc = nullsc; in p7_Pipeline()
754 pre_score = (fwdsc - nullsc) / eslCONST_LOG2; in p7_Pipeline()
755 seq_score = (fwdsc - (nullsc + seqbias)) / eslCONST_LOG2; in p7_Pipeline()
1045 float nullsc; in p7_pli_postViterbi_LongTarget() local
1065 p7_bg_NullOne (bg, subseq, window_len, &nullsc); in p7_pli_postViterbi_LongTarget()
1163 dom_score = (bitscore - (nullsc)) / eslCONST_LOG2; in p7_pli_postViterbi_LongTarget()
1346 p7_bg_NullOne (bg, subseq, loc_window_len, &nullsc); in p7_pli_postSSV_LongTarget()
1605 p7_bg_NullOne (bg, subseq, window->length, &nullsc); in p7_Pipeline_LongTarget()
[all …]
H A Dp7_bg.c474 …float nullsc; /* (or it could be passed in as an arg, but for sure it shouldn… in p7_bg_FilterScore() local
476 esl_hmm_Forward(dsq, L, bg->fhmm, hmx, &nullsc); in p7_bg_FilterScore()
479 *ret_sc = nullsc + (float) L * logf(bg->p1) + logf(1.-bg->p1); in p7_bg_FilterScore()
675 float nullsc, filtersc, H; in main() local
704 p7_bg_NullOne (bg, sq->dsq, sq->n, &nullsc); in main()
707 … printf("%-20s %5d %8.5f %8.5f %8.5f\n", sq->name, (int) sq->n, nullsc, filtersc, filtersc-nullsc); in main()
H A Dgeneric_fwdback.c458 float vsc, nullsc; in utest_forward() local
475 if (p7_bg_NullOne(bg, dsq, L, &nullsc) != eslOK) esl_fatal("null score failed"); in utest_forward()
477 avg_sc += fsc - nullsc; in utest_forward()
503 float vsc, fsc, nullsc, tracesc; in utest_generation() local
516 if (p7_bg_NullOne(bg, sq->dsq, sq->n, &nullsc) != eslOK) esl_fatal("null score failed"); in utest_generation()
525 avg_fsc += (fsc - nullsc); in utest_generation()
741 float nullsc; in main() local
799 p7_bg_NullOne(bg, sq->dsq, sq->n, &nullsc); in main()
804 (fsc - nullsc) / eslCONST_LOG2, (bsc - nullsc) / eslCONST_LOG2); in main()
H A Dmodelstats.c111 float nullsc; in p7_MeanForwardScore() local
124 …if (p7_bg_NullOne(bg, sq->dsq, sq->n, &nullsc) != eslOK) p7_Die("failed to run bg_NullOne()"); in p7_MeanForwardScore()
125 bitscore = (fsc - nullsc) / eslCONST_LOG2; in p7_MeanForwardScore()
H A Dgeneric_msv.c171 float nullsc; in p7_GMSV_longtarget() local
194 p7_bg_NullOne (bg, dsq, gm->max_length, &nullsc); in p7_GMSV_longtarget()
196 sc_thresh = nullsc + (invP * eslCONST_LOG2) - tmove - tloop_total; in p7_GMSV_longtarget()
510 float sc, nullsc, seqscore, lnP; in main() local
544 p7_bg_NullOne (bg, sq->dsq, sq->n, &nullsc); in main()
545 seqscore = (sc - nullsc) / eslCONST_LOG2; in main()
/dports/biology/hmmer/hmmer-3.3/src/
H A Devalues.c244 float sc, nullsc; in p7_MSVMu() local
258 if ((status = p7_bg_NullOne(bg, dsq, L, &nullsc)) != eslOK) goto ERROR; in p7_MSVMu()
264 xv[i] = (sc - nullsc) / eslCONST_LOG2; in p7_MSVMu()
313 float sc, nullsc; in p7_ViterbiMu() local
327 if ((status = p7_bg_NullOne(bg, dsq, L, &nullsc)) != eslOK) goto ERROR; in p7_ViterbiMu()
333 xv[i] = (sc - nullsc) / eslCONST_LOG2; in p7_ViterbiMu()
417 float fsc, nullsc; in p7_Tau() local
433 if ((status = p7_bg_NullOne(bg, dsq, L, &nullsc)) != eslOK) goto ERROR; in p7_Tau()
434 xv[i] = (fsc - nullsc) / eslCONST_LOG2; in p7_Tau()
H A Dp7_pipeline.c690 p7_bg_NullOne (bg, sq->dsq, sq->n, &nullsc); in p7_Pipeline()
694 seq_score = (usc - nullsc) / eslCONST_LOG2; in p7_Pipeline()
707 else filtersc = nullsc; in p7_Pipeline()
754 pre_score = (fwdsc - nullsc) / eslCONST_LOG2; in p7_Pipeline()
755 seq_score = (fwdsc - (nullsc + seqbias)) / eslCONST_LOG2; in p7_Pipeline()
1045 float nullsc; in p7_pli_postViterbi_LongTarget() local
1065 p7_bg_NullOne (bg, subseq, window_len, &nullsc); in p7_pli_postViterbi_LongTarget()
1163 dom_score = (bitscore - (nullsc)) / eslCONST_LOG2; in p7_pli_postViterbi_LongTarget()
1346 p7_bg_NullOne (bg, subseq, loc_window_len, &nullsc); in p7_pli_postSSV_LongTarget()
1605 p7_bg_NullOne (bg, subseq, window->length, &nullsc); in p7_Pipeline_LongTarget()
[all …]
H A Dp7_bg.c474 …float nullsc; /* (or it could be passed in as an arg, but for sure it shouldn… in p7_bg_FilterScore() local
476 esl_hmm_Forward(dsq, L, bg->fhmm, hmx, &nullsc); in p7_bg_FilterScore()
479 *ret_sc = nullsc + (float) L * logf(bg->p1) + logf(1.-bg->p1); in p7_bg_FilterScore()
675 float nullsc, filtersc, H; in main() local
704 p7_bg_NullOne (bg, sq->dsq, sq->n, &nullsc); in main()
707 … printf("%-20s %5d %8.5f %8.5f %8.5f\n", sq->name, (int) sq->n, nullsc, filtersc, filtersc-nullsc); in main()
H A Dgeneric_fwdback.c458 float vsc, nullsc; in utest_forward() local
475 if (p7_bg_NullOne(bg, dsq, L, &nullsc) != eslOK) esl_fatal("null score failed"); in utest_forward()
477 avg_sc += fsc - nullsc; in utest_forward()
503 float vsc, fsc, nullsc, tracesc; in utest_generation() local
516 if (p7_bg_NullOne(bg, sq->dsq, sq->n, &nullsc) != eslOK) esl_fatal("null score failed"); in utest_generation()
525 avg_fsc += (fsc - nullsc); in utest_generation()
741 float nullsc; in main() local
799 p7_bg_NullOne(bg, sq->dsq, sq->n, &nullsc); in main()
804 (fsc - nullsc) / eslCONST_LOG2, (bsc - nullsc) / eslCONST_LOG2); in main()
H A Dmodelstats.c111 float nullsc; in p7_MeanForwardScore() local
124 …if (p7_bg_NullOne(bg, sq->dsq, sq->n, &nullsc) != eslOK) p7_Die("failed to run bg_NullOne()"); in p7_MeanForwardScore()
125 bitscore = (fsc - nullsc) / eslCONST_LOG2; in p7_MeanForwardScore()
H A Dgeneric_msv.c171 float nullsc; in p7_GMSV_longtarget() local
194 p7_bg_NullOne (bg, dsq, gm->max_length, &nullsc); in p7_GMSV_longtarget()
196 sc_thresh = nullsc + (invP * eslCONST_LOG2) - tmove - tloop_total; in p7_GMSV_longtarget()
510 float sc, nullsc, seqscore, lnP; in main() local
544 p7_bg_NullOne (bg, sq->dsq, sq->n, &nullsc); in main()
545 seqscore = (sc - nullsc) / eslCONST_LOG2; in main()
/dports/biology/infernal/infernal-1.1.3/hmmer/src/impl_sse/
H A Dmsvfilter.c309 float nullsc; in p7_SSVFilter_longtarget() local
322 p7_bg_NullOne (bg, dsq, om->max_length, &nullsc); in p7_SSVFilter_longtarget()
324 …sc_thresh = (int) ceil( ( ( nullsc + (invP * eslCONST_LOG2) + 3.0 ) * om->scale_b ) + om->base_b… in p7_SSVFilter_longtarget()
780 float msvraw, nullsc, msvscore; in main() local
827 p7_bg_NullOne (bg, sq->dsq, sq->n, &nullsc); in main()
828 msvscore = (msvraw - nullsc) / eslCONST_LOG2; in main()
832 gscore = (graw - nullsc) / eslCONST_LOG2; in main()
847 printf("null score: %.2f nats\n", nullsc); in main()
H A Dvitfilter.c823 float vfraw, nullsc, vfscore; in main() local
867 p7_bg_NullOne (bg, sq->dsq, sq->n, &nullsc); in main()
868 vfscore = (vfraw - nullsc) / eslCONST_LOG2; in main()
872 gscore = (graw - nullsc) / eslCONST_LOG2; in main()
887 printf("null score: %.2f nats\n", nullsc); in main()
/dports/biology/infernal/infernal-1.1.3/hmmer/src/impl_vmx/
H A Dmsvfilter.c298 float nullsc; in p7_SSVFilter_longtarget() local
310 p7_bg_NullOne (bg, dsq, om->max_length, &nullsc); in p7_SSVFilter_longtarget()
312 …sc_thresh = (int) ceil( ( ( nullsc + (invP * eslCONST_LOG2) + 3.0 ) * om->scale_b ) + om->base_b… in p7_SSVFilter_longtarget()
766 float msvraw, nullsc, msvscore; in main() local
812 p7_bg_NullOne (bg, sq->dsq, sq->n, &nullsc); in main()
813 msvscore = (msvraw - nullsc) / eslCONST_LOG2; in main()
817 gscore = (graw - nullsc) / eslCONST_LOG2; in main()
832 printf("null score: %.2f nats\n", nullsc); in main()
H A Dvitfilter.c819 float vfraw, nullsc, vfscore; in main() local
863 p7_bg_NullOne (bg, sq->dsq, sq->n, &nullsc); in main()
864 vfscore = (vfraw - nullsc) / eslCONST_LOG2; in main()
868 gscore = (graw - nullsc) / eslCONST_LOG2; in main()
883 printf("null score: %.2f nats\n", nullsc); in main()
/dports/biology/hmmer/hmmer-3.3/src/impl_sse/
H A Dmsvfilter.c309 float nullsc; in p7_SSVFilter_longtarget() local
322 p7_bg_NullOne (bg, dsq, om->max_length, &nullsc); in p7_SSVFilter_longtarget()
324 …sc_thresh = (int) ceil( ( ( nullsc + (invP * eslCONST_LOG2) + 3.0 ) * om->scale_b ) + om->base_b… in p7_SSVFilter_longtarget()
780 float msvraw, nullsc, msvscore; in main() local
827 p7_bg_NullOne (bg, sq->dsq, sq->n, &nullsc); in main()
828 msvscore = (msvraw - nullsc) / eslCONST_LOG2; in main()
832 gscore = (graw - nullsc) / eslCONST_LOG2; in main()
847 printf("null score: %.2f nats\n", nullsc); in main()
H A Dvitfilter.c823 float vfraw, nullsc, vfscore; in main() local
867 p7_bg_NullOne (bg, sq->dsq, sq->n, &nullsc); in main()
868 vfscore = (vfraw - nullsc) / eslCONST_LOG2; in main()
872 gscore = (graw - nullsc) / eslCONST_LOG2; in main()
887 printf("null score: %.2f nats\n", nullsc); in main()
/dports/biology/hmmer/hmmer-3.3/src/impl_vmx/
H A Dmsvfilter.c298 float nullsc; in p7_SSVFilter_longtarget() local
310 p7_bg_NullOne (bg, dsq, om->max_length, &nullsc); in p7_SSVFilter_longtarget()
312 …sc_thresh = (int) ceil( ( ( nullsc + (invP * eslCONST_LOG2) + 3.0 ) * om->scale_b ) + om->base_b… in p7_SSVFilter_longtarget()
766 float msvraw, nullsc, msvscore; in main() local
812 p7_bg_NullOne (bg, sq->dsq, sq->n, &nullsc); in main()
813 msvscore = (msvraw - nullsc) / eslCONST_LOG2; in main()
817 gscore = (graw - nullsc) / eslCONST_LOG2; in main()
832 printf("null score: %.2f nats\n", nullsc); in main()
/dports/biology/infernal/infernal-1.1.3/easel/
H A Desl_hmm.c767 float fwdsc, nullsc; in main() local
780 esl_hmm_Forward(sq->dsq, sq->n, bg, hmx, &nullsc); in main()
784 nullsc * eslCONST_LOG2R, (nullsc * eslCONST_LOG2R) / sq->n, in main()
785 (fwdsc - nullsc) * eslCONST_LOG2R, (fwdsc-nullsc) * eslCONST_LOG2R / sq->n); in main()
/dports/biology/hmmer/hmmer-3.3/easel/
H A Desl_hmm.c767 float fwdsc, nullsc; in main() local
780 esl_hmm_Forward(sq->dsq, sq->n, bg, hmx, &nullsc); in main()
784 nullsc * eslCONST_LOG2R, (nullsc * eslCONST_LOG2R) / sq->n, in main()
785 (fwdsc - nullsc) * eslCONST_LOG2R, (fwdsc-nullsc) * eslCONST_LOG2R / sq->n); in main()
/dports/net/openldap25-server/openldap-2.5.9/contrib/slapd-modules/rbac/
H A Dinit.c31 static slap_callback nullsc = { NULL, NULL, NULL, NULL }; variable
198 op2->o_callback = &nullsc; in initialize_tenant()
/dports/net/openldap25-client/openldap-2.5.9/contrib/slapd-modules/rbac/
H A Dinit.c31 static slap_callback nullsc = { NULL, NULL, NULL, NULL }; variable
198 op2->o_callback = &nullsc; in initialize_tenant()
/dports/net/openldap26-client/openldap-2.6.0/contrib/slapd-modules/rbac/
H A Dinit.c31 static slap_callback nullsc = { NULL, NULL, NULL, NULL }; variable
198 op2->o_callback = &nullsc; in initialize_tenant()
/dports/net/openldap26-server/openldap-2.6.0/contrib/slapd-modules/rbac/
H A Dinit.c31 static slap_callback nullsc = { NULL, NULL, NULL, NULL }; variable
198 op2->o_callback = &nullsc; in initialize_tenant()

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