/dports/biology/gatk/gatk-4.2.0.0/src/main/java/org/broadinstitute/hellbender/utils/recalibration/ |
H A D | RecalDatum.java | 34 private long numObservations; field in RecalDatum 71 numObservations = _numObservations; in RecalDatum() 82 this.numObservations = copy.numObservations; in RecalDatum() 128 if ( numObservations == 0 ) in getEmpiricalErrorRate() 134 … final double doubleObservations = numObservations + SMOOTHING_CONSTANT + SMOOTHING_CONSTANT; in getEmpiricalErrorRate() 184 return numObservations; in getNumObservations() 187 public final void setNumObservations(final long numObservations) { in setNumObservations() argument 188 if ( numObservations < 0 ) throw new IllegalArgumentException("numObservations < 0"); in setNumObservations() 189 this.numObservations = numObservations; in setNumObservations() 204 numObservations += by; in incrementNumObservations() [all …]
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/dports/science/dakota/dakota-6.13.0-release-public.src-UI/packages/external/queso/test/t01_valid_cycle/ |
H A D | TgaValidationCycle_likelihood.h | 116 unsigned int numObservations = 0; in likelihoodRoutine_Data() local 124 m_Te1[numObservations] = tmpTe; in likelihoodRoutine_Data() 125 m_Me1[numObservations] = tmpMe; in likelihoodRoutine_Data() 126 numObservations++; in likelihoodRoutine_Data() 150 unsigned int numObservations = 0; in likelihoodRoutine_Data() local 158 m_Te2[numObservations] = tmpTe; in likelihoodRoutine_Data() 159 m_Me2[numObservations] = tmpMe; in likelihoodRoutine_Data() 160 numObservations++; in likelihoodRoutine_Data() 184 unsigned int numObservations = 0; in likelihoodRoutine_Data() local 192 m_Te3[numObservations] = tmpTe; in likelihoodRoutine_Data() [all …]
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/dports/math/mlpack/mlpack-3.4.2/src/mlpack/core/dists/ |
H A D | discrete_distribution.hpp | 63 DiscreteDistribution(const size_t numObservations) : in DiscreteDistribution() argument 65 arma::ones<arma::vec>(numObservations) / numObservations)) in DiscreteDistribution() 76 DiscreteDistribution(const arma::Col<size_t>& numObservations) in DiscreteDistribution() argument 78 for (size_t i = 0; i < numObservations.n_elem; ++i) in DiscreteDistribution() 80 const size_t numObs = size_t(numObservations[i]); in DiscreteDistribution()
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/dports/www/mediawiki136/mediawiki-1.36.3/vendor/wikimedia/running-stat/src/Wikimedia/ |
H A D | PSquare.php | 51 private $numObservations = 0; variable in Wikimedia\\PSquare 71 return $this->numObservations; 80 $this->numObservations++; 82 if ( $this->numObservations <= 5 ) { 84 if ( $this->numObservations === 5 ) {
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/dports/www/mediawiki137/mediawiki-1.37.1/vendor/wikimedia/running-stat/src/Wikimedia/ |
H A D | PSquare.php | 51 private $numObservations = 0; 71 return $this->numObservations; 80 $this->numObservations++; 82 if ( $this->numObservations <= 5 ) { 84 if ( $this->numObservations === 5 ) {
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/dports/www/mediawiki135/mediawiki-1.35.5/vendor/wikimedia/running-stat/src/Wikimedia/ |
H A D | PSquare.php | 51 private $numObservations = 0; variable in Wikimedia\\PSquare 71 return $this->numObservations; 80 $this->numObservations++; 82 if ( $this->numObservations <= 5 ) { 84 if ( $this->numObservations === 5 ) {
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/dports/math/apache-commons-math/commons-math3-3.6.1-src/src/test/java/org/apache/commons/math3/fitting/leastsquares/ |
H A D | StatisticalReferenceDataset.java | 37 private final int numObservations; field in StatisticalReferenceDataset 78 this.numObservations = index[1] - index[0] + 1; in StatisticalReferenceDataset() 79 this.x = new double[this.numObservations]; in StatisticalReferenceDataset() 80 this.y = new double[this.numObservations]; in StatisticalReferenceDataset() 81 for (int i = 0; i < this.numObservations; i++) { in StatisticalReferenceDataset() 188 return numObservations;
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/dports/math/apache-commons-math/commons-math3-3.6.1-src/src/test/java/org/apache/commons/math3/optim/nonlinear/vector/jacobian/ |
H A D | StatisticalReferenceDataset.java | 43 private final int numObservations; field in StatisticalReferenceDataset 93 this.numObservations = index[1] - index[0] + 1; in StatisticalReferenceDataset() 94 this.x = new double[this.numObservations]; in StatisticalReferenceDataset() 95 this.y = new double[this.numObservations]; in StatisticalReferenceDataset() 96 for (int i = 0; i < this.numObservations; i++) { in StatisticalReferenceDataset() 203 return numObservations;
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/dports/math/apache-commons-math/commons-math3-3.6.1-src/src/test/java/org/apache/commons/math3/optimization/general/ |
H A D | StatisticalReferenceDataset.java | 41 private final int numObservations; field in StatisticalReferenceDataset 91 this.numObservations = index[1] - index[0] + 1; in StatisticalReferenceDataset() 92 this.x = new double[this.numObservations]; in StatisticalReferenceDataset() 93 this.y = new double[this.numObservations]; in StatisticalReferenceDataset() 94 for (int i = 0; i < this.numObservations; i++) { in StatisticalReferenceDataset() 196 return numObservations; in getNumObservations()
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/dports/math/vtk8/VTK-8.2.0/Filters/ParallelStatistics/ |
H A D | vtkPKMeansStatistics.cxx | 58 vtkIdType vtkPKMeansStatistics::GetTotalNumberOfObservations( vtkIdType numObservations ) in GetTotalNumberOfObservations() argument 63 return numObservations; in GetTotalNumberOfObservations() 70 return numObservations; in GetTotalNumberOfObservations() 74 com->AllReduce( &numObservations, &totalNumObservations, 1, vtkCommunicator::SUM_OP ); in GetTotalNumberOfObservations()
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H A D | vtkPKMeansStatistics.h | 72 vtkIdType GetTotalNumberOfObservations( vtkIdType numObservations ) override;
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/dports/math/vtk9/VTK-9.1.0/Filters/ParallelStatistics/ |
H A D | vtkPKMeansStatistics.cxx | 56 vtkIdType vtkPKMeansStatistics::GetTotalNumberOfObservations(vtkIdType numObservations) in GetTotalNumberOfObservations() argument 61 return numObservations; in GetTotalNumberOfObservations() 68 return numObservations; in GetTotalNumberOfObservations() 72 com->AllReduce(&numObservations, &totalNumObservations, 1, vtkCommunicator::SUM_OP); in GetTotalNumberOfObservations()
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H A D | vtkPKMeansStatistics.h | 69 vtkIdType GetTotalNumberOfObservations(vtkIdType numObservations) override;
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/dports/math/vtk6/VTK-6.2.0/Filters/ParallelStatistics/ |
H A D | vtkPKMeansStatistics.cxx | 58 vtkIdType vtkPKMeansStatistics::GetTotalNumberOfObservations( vtkIdType numObservations ) in GetTotalNumberOfObservations() argument 63 return numObservations; in GetTotalNumberOfObservations() 70 return numObservations; in GetTotalNumberOfObservations() 74 com->AllReduce( &numObservations, &totalNumObservations, 1, vtkCommunicator::SUM_OP ); in GetTotalNumberOfObservations()
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H A D | vtkPKMeansStatistics.h | 64 virtual vtkIdType GetTotalNumberOfObservations( vtkIdType numObservations );
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/dports/math/vtk8/VTK-8.2.0/Filters/Statistics/ |
H A D | vtkKMeansStatistics.cxx | 224 vtkIdType vtkKMeansStatistics::GetTotalNumberOfObservations( vtkIdType numObservations ) in GetTotalNumberOfObservations() argument 226 return numObservations; in GetTotalNumberOfObservations() 347 vtkIdType numObservations = inData->GetNumberOfRows(); in Learn() local 348 vtkIdType totalNumberOfObservations = this->GetTotalNumberOfObservations( numObservations ); in Learn() 368 clusterMemberID->SetNumberOfValues( numObservations*numRuns ); in Learn() 760 vtkIdType numObservations = inData->GetNumberOfRows(); in Initialize() local 787 this->Distances->SetNumberOfValues( numObservations * this->NumRuns ); in Initialize() 788 this->ClusterMemberIDs->SetNumberOfValues( numObservations * this->NumRuns ); in Initialize() 791 for ( vtkIdType observation = 0; observation < numObservations; ++ observation ) in Initialize()
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H A D | vtkKMeansStatistics.h | 227 virtual vtkIdType GetTotalNumberOfObservations( vtkIdType numObservations );
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/dports/math/vtk9/VTK-9.1.0/Filters/Statistics/ |
H A D | vtkKMeansStatistics.cxx | 218 vtkIdType vtkKMeansStatistics::GetTotalNumberOfObservations(vtkIdType numObservations) in GetTotalNumberOfObservations() argument 220 return numObservations; in GetTotalNumberOfObservations() 325 vtkIdType numObservations = inData->GetNumberOfRows(); in Learn() local 326 vtkIdType totalNumberOfObservations = this->GetTotalNumberOfObservations(numObservations); in Learn() 346 clusterMemberID->SetNumberOfValues(numObservations * numRuns); in Learn() 724 vtkIdType numObservations = inData->GetNumberOfRows(); in Initialize() local 751 this->Distances->SetNumberOfValues(numObservations * this->NumRuns); in Initialize() 752 this->ClusterMemberIDs->SetNumberOfValues(numObservations * this->NumRuns); in Initialize() 755 for (vtkIdType observation = 0; observation < numObservations; ++observation) in Initialize()
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H A D | vtkKMeansStatistics.h | 214 virtual vtkIdType GetTotalNumberOfObservations(vtkIdType numObservations);
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/dports/math/vtk6/VTK-6.2.0/Filters/Statistics/ |
H A D | vtkKMeansStatistics.cxx | 224 vtkIdType vtkKMeansStatistics::GetTotalNumberOfObservations( vtkIdType numObservations ) in GetTotalNumberOfObservations() argument 226 return numObservations; in GetTotalNumberOfObservations() 347 vtkIdType numObservations = inData->GetNumberOfRows(); in Learn() local 348 vtkIdType totalNumberOfObservations = this->GetTotalNumberOfObservations( numObservations ); in Learn() 368 clusterMemberID->SetNumberOfValues( numObservations*numRuns ); in Learn() 760 vtkIdType numObservations = inData->GetNumberOfRows(); in Initialize() local 787 this->Distances->SetNumberOfValues( numObservations * this->NumRuns ); in Initialize() 788 this->ClusterMemberIDs->SetNumberOfValues( numObservations * this->NumRuns ); in Initialize() 791 for ( vtkIdType observation = 0; observation < numObservations; ++ observation ) in Initialize()
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H A D | vtkKMeansStatistics.h | 203 virtual vtkIdType GetTotalNumberOfObservations( vtkIdType numObservations );
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/dports/math/g2o/g2o-20201223_git/g2o/examples/bal/ |
H A D | bal_example.cpp | 342 int numCameras, numPoints, numObservations; in main() local 343 ifs >> numCameras >> numPoints >> numObservations; in main() 345 cerr << PVAR(numCameras) << " " << PVAR(numPoints) << " " << PVAR(numObservations) << endl; in main() 369 for (int i = 0; i < numObservations; ++i) { in main()
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/dports/biology/gatk/gatk-4.2.0.0/src/test/java/org/broadinstitute/hellbender/utils/ |
H A D | MannWhitneyUUnitTest.java | 136 …tribution(final List<Double> result, final int target, final int skew, final int numObservations) { in makeDistribution() argument 141 for ( int i = 0; i < numObservations; i++ ) { in makeDistribution()
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/dports/science/dakota/dakota-6.13.0-release-public.src-UI/src/ |
H A D | RandomFieldModel.hpp | 154 size_t numObservations; member in Dakota::RandomFieldModel
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/dports/science/plumed/plumed2-2.7.2/patches/gromacs-2020.6.diff/src/gromacs/mdlib/ |
H A D | expanded.cpp.preplumed | 526 * Var(i,j) = {avg[xi(i->j)^2] / avg[xi(i->j)]^2 - 1} / numObservations(i->j) 527 * + {avg[xi(j->i)^2] / avg[xi(j->i)]^2 - 1} / numObservations(j->i) 530 …* a state, numObservations(i->j) == numObservations(i) and numObservations(j->i) == numObservation…
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