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Searched refs:numObservations (Results 1 – 25 of 27) sorted by relevance

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/dports/biology/gatk/gatk-4.2.0.0/src/main/java/org/broadinstitute/hellbender/utils/recalibration/
H A DRecalDatum.java34 private long numObservations; field in RecalDatum
71 numObservations = _numObservations; in RecalDatum()
82 this.numObservations = copy.numObservations; in RecalDatum()
128 if ( numObservations == 0 ) in getEmpiricalErrorRate()
134 … final double doubleObservations = numObservations + SMOOTHING_CONSTANT + SMOOTHING_CONSTANT; in getEmpiricalErrorRate()
184 return numObservations; in getNumObservations()
187 public final void setNumObservations(final long numObservations) { in setNumObservations() argument
188 if ( numObservations < 0 ) throw new IllegalArgumentException("numObservations < 0"); in setNumObservations()
189 this.numObservations = numObservations; in setNumObservations()
204 numObservations += by; in incrementNumObservations()
[all …]
/dports/science/dakota/dakota-6.13.0-release-public.src-UI/packages/external/queso/test/t01_valid_cycle/
H A DTgaValidationCycle_likelihood.h116 unsigned int numObservations = 0; in likelihoodRoutine_Data() local
124 m_Te1[numObservations] = tmpTe; in likelihoodRoutine_Data()
125 m_Me1[numObservations] = tmpMe; in likelihoodRoutine_Data()
126 numObservations++; in likelihoodRoutine_Data()
150 unsigned int numObservations = 0; in likelihoodRoutine_Data() local
158 m_Te2[numObservations] = tmpTe; in likelihoodRoutine_Data()
159 m_Me2[numObservations] = tmpMe; in likelihoodRoutine_Data()
160 numObservations++; in likelihoodRoutine_Data()
184 unsigned int numObservations = 0; in likelihoodRoutine_Data() local
192 m_Te3[numObservations] = tmpTe; in likelihoodRoutine_Data()
[all …]
/dports/math/mlpack/mlpack-3.4.2/src/mlpack/core/dists/
H A Ddiscrete_distribution.hpp63 DiscreteDistribution(const size_t numObservations) : in DiscreteDistribution() argument
65 arma::ones<arma::vec>(numObservations) / numObservations)) in DiscreteDistribution()
76 DiscreteDistribution(const arma::Col<size_t>& numObservations) in DiscreteDistribution() argument
78 for (size_t i = 0; i < numObservations.n_elem; ++i) in DiscreteDistribution()
80 const size_t numObs = size_t(numObservations[i]); in DiscreteDistribution()
/dports/www/mediawiki136/mediawiki-1.36.3/vendor/wikimedia/running-stat/src/Wikimedia/
H A DPSquare.php51 private $numObservations = 0; variable in Wikimedia\\PSquare
71 return $this->numObservations;
80 $this->numObservations++;
82 if ( $this->numObservations <= 5 ) {
84 if ( $this->numObservations === 5 ) {
/dports/www/mediawiki137/mediawiki-1.37.1/vendor/wikimedia/running-stat/src/Wikimedia/
H A DPSquare.php51 private $numObservations = 0;
71 return $this->numObservations;
80 $this->numObservations++;
82 if ( $this->numObservations <= 5 ) {
84 if ( $this->numObservations === 5 ) {
/dports/www/mediawiki135/mediawiki-1.35.5/vendor/wikimedia/running-stat/src/Wikimedia/
H A DPSquare.php51 private $numObservations = 0; variable in Wikimedia\\PSquare
71 return $this->numObservations;
80 $this->numObservations++;
82 if ( $this->numObservations <= 5 ) {
84 if ( $this->numObservations === 5 ) {
/dports/math/apache-commons-math/commons-math3-3.6.1-src/src/test/java/org/apache/commons/math3/fitting/leastsquares/
H A DStatisticalReferenceDataset.java37 private final int numObservations; field in StatisticalReferenceDataset
78 this.numObservations = index[1] - index[0] + 1; in StatisticalReferenceDataset()
79 this.x = new double[this.numObservations]; in StatisticalReferenceDataset()
80 this.y = new double[this.numObservations]; in StatisticalReferenceDataset()
81 for (int i = 0; i < this.numObservations; i++) { in StatisticalReferenceDataset()
188 return numObservations;
/dports/math/apache-commons-math/commons-math3-3.6.1-src/src/test/java/org/apache/commons/math3/optim/nonlinear/vector/jacobian/
H A DStatisticalReferenceDataset.java43 private final int numObservations; field in StatisticalReferenceDataset
93 this.numObservations = index[1] - index[0] + 1; in StatisticalReferenceDataset()
94 this.x = new double[this.numObservations]; in StatisticalReferenceDataset()
95 this.y = new double[this.numObservations]; in StatisticalReferenceDataset()
96 for (int i = 0; i < this.numObservations; i++) { in StatisticalReferenceDataset()
203 return numObservations;
/dports/math/apache-commons-math/commons-math3-3.6.1-src/src/test/java/org/apache/commons/math3/optimization/general/
H A DStatisticalReferenceDataset.java41 private final int numObservations; field in StatisticalReferenceDataset
91 this.numObservations = index[1] - index[0] + 1; in StatisticalReferenceDataset()
92 this.x = new double[this.numObservations]; in StatisticalReferenceDataset()
93 this.y = new double[this.numObservations]; in StatisticalReferenceDataset()
94 for (int i = 0; i < this.numObservations; i++) { in StatisticalReferenceDataset()
196 return numObservations; in getNumObservations()
/dports/math/vtk8/VTK-8.2.0/Filters/ParallelStatistics/
H A DvtkPKMeansStatistics.cxx58 vtkIdType vtkPKMeansStatistics::GetTotalNumberOfObservations( vtkIdType numObservations ) in GetTotalNumberOfObservations() argument
63 return numObservations; in GetTotalNumberOfObservations()
70 return numObservations; in GetTotalNumberOfObservations()
74 com->AllReduce( &numObservations, &totalNumObservations, 1, vtkCommunicator::SUM_OP ); in GetTotalNumberOfObservations()
H A DvtkPKMeansStatistics.h72 vtkIdType GetTotalNumberOfObservations( vtkIdType numObservations ) override;
/dports/math/vtk9/VTK-9.1.0/Filters/ParallelStatistics/
H A DvtkPKMeansStatistics.cxx56 vtkIdType vtkPKMeansStatistics::GetTotalNumberOfObservations(vtkIdType numObservations) in GetTotalNumberOfObservations() argument
61 return numObservations; in GetTotalNumberOfObservations()
68 return numObservations; in GetTotalNumberOfObservations()
72 com->AllReduce(&numObservations, &totalNumObservations, 1, vtkCommunicator::SUM_OP); in GetTotalNumberOfObservations()
H A DvtkPKMeansStatistics.h69 vtkIdType GetTotalNumberOfObservations(vtkIdType numObservations) override;
/dports/math/vtk6/VTK-6.2.0/Filters/ParallelStatistics/
H A DvtkPKMeansStatistics.cxx58 vtkIdType vtkPKMeansStatistics::GetTotalNumberOfObservations( vtkIdType numObservations ) in GetTotalNumberOfObservations() argument
63 return numObservations; in GetTotalNumberOfObservations()
70 return numObservations; in GetTotalNumberOfObservations()
74 com->AllReduce( &numObservations, &totalNumObservations, 1, vtkCommunicator::SUM_OP ); in GetTotalNumberOfObservations()
H A DvtkPKMeansStatistics.h64 virtual vtkIdType GetTotalNumberOfObservations( vtkIdType numObservations );
/dports/math/vtk8/VTK-8.2.0/Filters/Statistics/
H A DvtkKMeansStatistics.cxx224 vtkIdType vtkKMeansStatistics::GetTotalNumberOfObservations( vtkIdType numObservations ) in GetTotalNumberOfObservations() argument
226 return numObservations; in GetTotalNumberOfObservations()
347 vtkIdType numObservations = inData->GetNumberOfRows(); in Learn() local
348 vtkIdType totalNumberOfObservations = this->GetTotalNumberOfObservations( numObservations ); in Learn()
368 clusterMemberID->SetNumberOfValues( numObservations*numRuns ); in Learn()
760 vtkIdType numObservations = inData->GetNumberOfRows(); in Initialize() local
787 this->Distances->SetNumberOfValues( numObservations * this->NumRuns ); in Initialize()
788 this->ClusterMemberIDs->SetNumberOfValues( numObservations * this->NumRuns ); in Initialize()
791 for ( vtkIdType observation = 0; observation < numObservations; ++ observation ) in Initialize()
H A DvtkKMeansStatistics.h227 virtual vtkIdType GetTotalNumberOfObservations( vtkIdType numObservations );
/dports/math/vtk9/VTK-9.1.0/Filters/Statistics/
H A DvtkKMeansStatistics.cxx218 vtkIdType vtkKMeansStatistics::GetTotalNumberOfObservations(vtkIdType numObservations) in GetTotalNumberOfObservations() argument
220 return numObservations; in GetTotalNumberOfObservations()
325 vtkIdType numObservations = inData->GetNumberOfRows(); in Learn() local
326 vtkIdType totalNumberOfObservations = this->GetTotalNumberOfObservations(numObservations); in Learn()
346 clusterMemberID->SetNumberOfValues(numObservations * numRuns); in Learn()
724 vtkIdType numObservations = inData->GetNumberOfRows(); in Initialize() local
751 this->Distances->SetNumberOfValues(numObservations * this->NumRuns); in Initialize()
752 this->ClusterMemberIDs->SetNumberOfValues(numObservations * this->NumRuns); in Initialize()
755 for (vtkIdType observation = 0; observation < numObservations; ++observation) in Initialize()
H A DvtkKMeansStatistics.h214 virtual vtkIdType GetTotalNumberOfObservations(vtkIdType numObservations);
/dports/math/vtk6/VTK-6.2.0/Filters/Statistics/
H A DvtkKMeansStatistics.cxx224 vtkIdType vtkKMeansStatistics::GetTotalNumberOfObservations( vtkIdType numObservations ) in GetTotalNumberOfObservations() argument
226 return numObservations; in GetTotalNumberOfObservations()
347 vtkIdType numObservations = inData->GetNumberOfRows(); in Learn() local
348 vtkIdType totalNumberOfObservations = this->GetTotalNumberOfObservations( numObservations ); in Learn()
368 clusterMemberID->SetNumberOfValues( numObservations*numRuns ); in Learn()
760 vtkIdType numObservations = inData->GetNumberOfRows(); in Initialize() local
787 this->Distances->SetNumberOfValues( numObservations * this->NumRuns ); in Initialize()
788 this->ClusterMemberIDs->SetNumberOfValues( numObservations * this->NumRuns ); in Initialize()
791 for ( vtkIdType observation = 0; observation < numObservations; ++ observation ) in Initialize()
H A DvtkKMeansStatistics.h203 virtual vtkIdType GetTotalNumberOfObservations( vtkIdType numObservations );
/dports/math/g2o/g2o-20201223_git/g2o/examples/bal/
H A Dbal_example.cpp342 int numCameras, numPoints, numObservations; in main() local
343 ifs >> numCameras >> numPoints >> numObservations; in main()
345 cerr << PVAR(numCameras) << " " << PVAR(numPoints) << " " << PVAR(numObservations) << endl; in main()
369 for (int i = 0; i < numObservations; ++i) { in main()
/dports/biology/gatk/gatk-4.2.0.0/src/test/java/org/broadinstitute/hellbender/utils/
H A DMannWhitneyUUnitTest.java136 …tribution(final List<Double> result, final int target, final int skew, final int numObservations) { in makeDistribution() argument
141 for ( int i = 0; i < numObservations; i++ ) { in makeDistribution()
/dports/science/dakota/dakota-6.13.0-release-public.src-UI/src/
H A DRandomFieldModel.hpp154 size_t numObservations; member in Dakota::RandomFieldModel
/dports/science/plumed/plumed2-2.7.2/patches/gromacs-2020.6.diff/src/gromacs/mdlib/
H A Dexpanded.cpp.preplumed526 * Var(i,j) = {avg[xi(i->j)^2] / avg[xi(i->j)]^2 - 1} / numObservations(i->j)
527 * + {avg[xi(j->i)^2] / avg[xi(j->i)]^2 - 1} / numObservations(j->i)
530 …* a state, numObservations(i->j) == numObservations(i) and numObservations(j->i) == numObservation…

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